1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGTGGCGGCGCGGAAGCTCGCCAACCACGCGCTCGTCCTCGGCGGCGGCCTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacccaaaacaccccccctccatgtcctttgtttgttcgtttcggtgtctctttgcagaggaccaagagtgagctttggttccaaaaggggatc...
species | Oryza sativa |
transcript | LOC_Os03g55850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|569927|gb|D40776.1|D40776
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|88669180|gb|CI720137.1|CI720137
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGANAAACTGGAAGACCAACATGCTGACCGCEST: gi|88825479|gb|CI776044.1|CI776044
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|29667854|gb|CB664129.1|CB664129
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: AGTGGCTCGCCTTTTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|58591798|gb|CF990106.1|CF990106
genomic: AGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGATTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCGGGCATGCTGACCGEST: gi|29667853|gb|CB664128.1|CB664128
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACC-AACATGCTGACCG
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|58591068|gb|CF989376.1|CF989376
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGATTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGAGCGACATGCTGACCGCEST: gi|568835|gb|D39684.1|D39684
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|58586796|gb|CF985104.1|CF985104
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGATTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAAGGGTGCTGACCGEST: gi|66913495|gb|CX100343.1|CX100343
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAA-CATGCTGACCG
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|88736312|gb|CI759820.1|CI759820
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGANAAACTGGAAGACCAACATGCTGACCGCEST: gi|218480554|gb|FG955808.1|FG955808
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGATTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|88733267|gb|CI756444.1|CI756444
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCEST: gi|88407922|gb|CI588951.1|CI588951
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
EST: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGT GTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
genomic: CTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacc ... tctactgcagGTACCTCCTGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGGCGGCGCGGAAGCTCGCCAACCACGCGCTCGTCCTCGGCGGCGGCCTCGGGTTCGGCACCACCTTCCTCAAGTGGCTCGCCTTCTTCGCCGCCGTgtgagtcacccaaaacaccccccctccatgtcctttgtttgttcgtttcggtgtctctttgcagaggaccaagagtgagctttggttccaaaaggggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc