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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGGGGCTGATGCGCACGCGGCTGCGCCTCCCCGTCGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCCATCCTCTTCACCCAGgtaagcgaggcgtagcgacggcgagacccccaccccaccgccaccctcgtttcgtttgtcgggttctgatctgggtggtggttttttggcgcgcggctgtgttgttcccgaggcag

Basic information

species Oryza sativa
transcript LOC_Os03g55380.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g55380.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G348578_T01 (Zea mays), 5'ss of exon 1
CGGGGGGCTGATGCGCACGCGGCTGCGCCTCCCCGTCGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCCATCCTCTTCACCCAGgtaagcgaggcgtagcgacggcgagacccccaccccaccgccaccctcgtttcgtttgtcgggttctgatctgggtggtggttttttggcgcgcggctgtgttgttcccgaggcag
 | ||| ||| |||| ||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |    ||||   |    || |   || |     | | || ||  ||    | | | |||||||||||||  | |   ||  | |||| || |  || |  |  ||||
TGCGGGTCTGTTGCGAACGCGACTGCGGCTTCCCGTGGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg----gcgagccccgagccacgttccgattcgtagcttcctt--gtagcgccgctcctgatctgggtgg--gctggctgtggtgcgg-tgggaggtgc--ggtgcag