Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag

Basic information

species Oryza sativa
transcript LOC_Os03g54890.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G072315_T01 (Zea mays), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgt----aagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag
||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||  |||||||||| ||||||||| |||||||||    ||||  |   | | |||||  |  |||| || |   ||| ||  ||  |||  |    ||| |  |||||  |      | | |   |    ||||
AGTACCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGgtgtgtaagcaacacctgcctggat--ccgtccggtttcattttgccacgtcctttttgg----ctggtgagatttatgcgtgctgcgtttgtttt--gcag

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgt----aagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag
    ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||  |||||||||| ||||||||| |||||||||    ||||  |   | | |||||  |  |||| || |   ||| ||  ||  |||  |    ||| |  |||||  |      | | |   |    ||||
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggat--ccgtccggtttcattttgccacgtcctttttgg----ctggtgagatttatgcgtgctgcgtttgtttt--gcag

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G090422_T01 (Zea mays), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagct-gcggatccatg------gatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag
||||||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |   ||    ||| |      |  | |      ||||  |||||  |  | | ||| ||  || ||    |  ||  |      ||||   ||    ||||
AGTACCTCCGCTTCCTCCGCAAGCGGATGAACACCAAGCCGTCCCACGGGCCCATCCACTTCCGCGCCCCCGCCAAGATCCTGTGGCGCACCATCCGCGGgtatgtcagcaacgccacgccgcccggatccgtctgatttcttccttgcgacgt-gctttgtggcttgtg---aggcttatgtttgctgtggctgattt--gcag

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G46850.1 (Glycine max), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttctctccgtttcccccttgtcatt--tcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag---
||||| | || |||||||||||| | ||||||||||||||||| || ||||||||||| |||||  | |||| ||||||| ||||||||||||| || |||| ||   |     ||    ||||| ||     ||       ||||  | ||||   ||| |    | | | || ||  | |     ||  ||     ||   
AGTACTTGCGTTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATCCATTTCCGTGCACCCGGCAAGATCTTCTGGCGCACCGTTCGTGGgtcag---cactctcacccttttctttctccccccaaaaaaacattaattgattaaagatattatctttcaattgggttcatttaaatgtctctgtataggta

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G46860.1 (Glycine max), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcgg-atccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag-----
||||| | || |||||||||||| | ||||||||||||||||| || ||||||||||| |||||  | |||| ||||||| ||||||||||||| || |||| ||    |  | || |   |||||||        |  |  |   ||  |  | | ||   ||     | || ||  | |    |||  ||     ||     
AGTACTTGCGTTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATCCATTTCCGTGCACCCGGCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtactgtcacccttttctttctctaaaaaaaacattaatttattgaagatattatcgttgc----aattgggttcatttaagtgtctctgtataggtaga

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaag-ctgcggatccatggatttctctccgtttcccccttgt------catttcgatttct----gatttctg---ttctgattttgggacctcgtggtgaatccccgcag
| ||| |  | |||||||||||  | ||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||| || ||||  | |||    |   ||   || |       || |   | |       | ||| ||||||     | ||  |   || |  | ||   | ||  || ||  |    | ||
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA16G13580.1 (Glycine max), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag--
||||| |  | |||||||||||  | |||||||||||||| ||||| |||||||||||||||||| | ||| |||||||| ||||||||||||| || ||||  | |     |   |   ||  | |     |  | |     | ||  || |   | |  |||| |  ||||  |   | ||  |   ||         
AGTACTTGAGGTTCCTCCGCAAACGCATGAACACCAAGCCTTCCCACGGCCCCATCCACTTCCGCGCACCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtttttcttttctttgttctttttttcctttctcacaatacttatatataacaatgttgttgttttttttcgttgttgttctcgttcgtaatttag

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttctctccgtttc--ccccttgtca---tttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag
| ||| |  | ||||| |||||  | ||||||||||| ||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||| || |||| ||       ||  |   ||| | |    ||     |||| | |   ||   | ||   |   |     || ||||      |||||| |  |    |   
AATACTTGAGGTTCCTTCGCAAACGCATGAACACCAAACCCTCCCATGGCCCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcattactcactttttttttttttactttaattccttttaaagtttataactttccaacacaagcgtg-ttttaatttgtcgtggggtgtttttgt--

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctg----ttctgattttgg-gacctcgtggtgaatccccgcag-
|||||||  | |||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||| ||| |||| |||| || |    ||  ||   ||||| |     |   |      ||     | ||     ||||    | ||| ||     || ||  || ||  |         
AGTACCTGAGGTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCATGGGCCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagtt----attaatatttttctgttgtccttatcagaaaaatgagagtgtcatgggtctggccctcctggttcaaatgatctaatgctgtttggtttttct

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv05s0029g00020.t01 (Vitis vinifera), 5'ss of exon 1
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagct--gcggatc--catggatttctctccgtttcccccttgtcatttcgatttctgattt-ctgttctgattttgggacct-cgtggtgaatccccgcag-----------------------------------
|||| || ||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||| | ||| |||||||||||||| | ||| | ||||||| ||||   |  |||    |  |||| ||| | ||| |   |   |    |||  | |  ||   | || | ||||    |      || ||  |      ||                                   
AGTATCTTCGCTTCCTCCGCAAGCGCATGAACACCAAGCCTTCCCATGGCCCAATCCACTTCCGCGCTCCCTCCAAGATCCTCTGGAGGACCATACGCGGgtgagcttgacttatcattttatatttttctgcattttctattccacgaaacgaagtttttttcattattttcatttatttattaatatgatgctttgattgagccaataaaatcccaaaatctctttctggtttgtag

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: EDP03478 (Chlamydomonas reinhardtii), 5'ss of exon 3
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttc-tctccgtttcccccttgtcatttcgatttctgatttctgtt--ctgattttgggacctcgtggtgaatccc-cgcag
||||   ||||||||| |||||| | ||||||||||| ||| |||  |||||| ||||||||||| ||||| |    ||| ||||||| || || ||||||| ||  ||   ||        || ||  ||       | |   |  | | |||   |   | |    ||||| |   |  |   |  ||||     ||| |
AGTATGACCGCTTCCTGCGCAAGCGCATGAACACCAACCCCACCCGCGGCCCCTTCCACTTCCGCGCCCCCTCGCGCATCTTCTGGCGGACTGTGCGCGGgtgagtagcatgtcggcttgcgtcgtcgtcgcggggggcctagaagcttggtttggaagggcagcaagctgatatctcg--cgaatactgaacttgacgcgg

upper sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S174_48V6.1 (Physcomitrella patens), 5'ss of exon 2
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttct---gatttctgttctgattttgggacctcgtggtgaatccccgcag
||||| |  | ||| |  | |||||||||||||||||||||  | | ||||| |||||||||||||| || |||   ||  | ||| | ||| | || ||||||  | |  |  | |  ||| || | | ||     | |||      | ||| |   | |       | | |      | ||   | |    ||  | | 
AGTACTTGAGGTTCTTGAGGAAGAGGATGAACACCAAGCCCAGCAAGGGCCCAATCCACTTCCGCTCACCTGCCCGTATTTTGTGGAGGACCATTCGTGGgtaaattacttagtctta-attgcttttctttgaatacgtgtatccagggtttttctaggtgcagaagcaggtagcactagctttggattttaccttggat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27577828|gb|CB000523.1|CB000523
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58599534|gb|CK010062.1|CK010062
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|88575679|gb|CI669824.1|CI669824
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58597252|gb|CK007780.1|CK007780
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|88675161|gb|CI729274.1|CI729274
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGG
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGG
EST: gi|27577972|gb|CB000667.1|CB000667
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCA
EST: gi|88677196|gb|CI731309.1|CI731309
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGA
EST: gi|5443703|gb|AU064389.2|AU064389
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58664019|gb|CK052705.1|CK052705
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|88760939|gb|CI770495.1|CI770495
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGC
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGC
EST: gi|33829708|gb|CF340677.1|CF340677
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGA
EST: gi|88672605|gb|CI726721.1|CI726721
EST:     CATCCACTTCCGCTCCCCCGCCCAAGATCCTCTGGCCGC-CCGTCCGGGG                         CATGATCCCGCACAAGAACAAGAGGGGACAGGCGGCGCTG
genomic: CATCCACTTCCGCTCCCCCGCC-AAGATCCTCTGGC-GCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTG
EST: gi|58673512|gb|CK062198.1|CK062198
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|86888621|gb|CI305689.1|CI305689
EST:     TCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: TCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58601861|gb|CK012389.1|CK012389
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58695434|gb|CK084121.1|CK084121
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|218480584|gb|FG964922.1|FG964922
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAATGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|88294333|gb|CI667307.1|CI667307
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|218498099|gb|FG967283.1|FG967283
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58594137|gb|CF992445.1|CF992445
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGG
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGG
EST: gi|218502993|gb|FG964681.1|FG964681
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|33662327|gb|CF293294.1|CF293294
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|88583011|gb|CI699482.1|CI699482
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCCCAAGACCAAGAGGGGAGAGGCGGNGCTGGCAAGGC
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGC
EST: gi|58594149|gb|CF992457.1|CF992457
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58691553|gb|CK080240.1|CK080240
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58597148|gb|CK007676.1|CK007676
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|27577829|gb|CB000524.1|CB000524
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|88573569|gb|CI665338.1|CI665338
EST:     CCATCCACTTCCGCTCCCCCGCCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGNGCTGGCAAGGCTGAA
genomic: CCATCCACTTCCGCTCCCCCGCC-AAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58677624|gb|CK066311.1|CK066311
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|218484320|gb|FG953179.1|FG953179
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: gi|58595748|gb|CK006276.1|CK006276
EST:     CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG                         CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 47

AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTC




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