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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGCCGGCGCTGCAGGCGTCGGATCTCAACGACTTCATCGCCCCCTCGCAGGACTGCATCATCTCCCTCAACAAGGGCCCCTCCGCCCGCCGCCTTCCGgtgagactcctaccccgcgctcgctgattccctttctgccctaggctggggctggattggagctatgcccggcggcgctgctccggtgttggttggcttg...

Basic information

species Oryza sativa
transcript LOC_Os03g53750.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G456690_T01 (Zea mays), 5'ss of exon 1
CTCGCCGGCGCTGCAGGCGTCGGATCTCAACGACTTCATCGCCCCCTCGCAGGACTGCATCATCTCCCTCAACAAGGGC---CCCTCCGCCCGCCGCCTTCCGgtgagactcctaccccgcgctcgctgattccctttctgccctag-gctggggctggattggagctatgcccggcggcgctgctccggtgttggttg-gcttg---
   ||||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||  |    ||||| |||||||||| | ||| | |   |  | |  |||  | |  |||  | | | ||||||   | |     |    |||| |||  |    ||||||     |||  | ||| |||     
---GCCGGTGCTGCAGGCGTCCGACCTCAACGACTTCATCGCCCCGTCGCAGGACTGCATCATCTCCCTCAATAAGAACACCTCCTCCTCCCGCCGCCTCCAGgtcaca---cagctctccgccaggt--ttcgttgtttaccctagtattcgtatccggggcgagccatggtcccgtgcgctggctgagtgcagtttgagctcacca

upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G171998_T01 (Zea mays), 5'ss of exon 1
CTCGCCGGCGCTGCAGGCGTCGGATCTCAACGACTTCATCGCCCCCTCGCAGGACTGCATCATCTCCCTCAACAAGGGC------CCCTCCGCCCGCCGCCTTCCGgtgagactcctaccccgcgctcgctgattccctttctgccctag-gctggggctggattggagctatgcccggcggcgctgctccggtgttggttggcttg--
      ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||  |       ||||| |||||||||  | |||       |  | |    |||   | |||  | | | ||||||   | | |   |    |||   ||   |  || || | |   || |   | | | |   
------GGCGCTGCAGGCGTCCGACCTCAACGACTTCATCGCCCCATCGCAGGACTGCATCATCTCCCTCAACAAGAACACCTCCTCCTCCTCCCGCCGCCCCCAGgtactggcacagctctctcctccaggtttcgttgtttaccctagtattcgtgtccggggcgagtgctggttg--ggtgcagtttgagt-tcactcgccatact

upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ06869 (Selaginella moellendorffii), 5'ss of exon 1
--CTCGCCGGCGCTGCAGGCGTCGGATCTCAACGACTTCATCGCCCCCTCGCAGGACTGCATCATCTCCCTCAACA---AGGGCCCCTCCGCCCGCCGCCTTCCGgtgagac-tcctaccccgcgctcgctgattccctttctgccctaggctggggctggattggagctatgcccggcggcgctgctccggtgttggttggcttg
  |||  | ||  || ||    |||||||||||||||||||||| || |||||||  ||| || | || |||||||   ||     |   |   ||     | |  | |||  | | ||       || | ||||     | |  |  ||| ||  | ||||  |   | |    |    |||                       
TTCTCCACCGCCTTGAAGCTCGCGGATCTCAACGACTTCATCGCGCCATCGCAGGCTTGCGTCGTATCGCTCAACAGCAAGAAGATCGAGGTGAGCTATGgtgctataagaaattccactagaatttcacggatttttcgtttcgcacaggatgacggtggaa-gcgtcaaaattcactcgcgag---------------------

upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ34840 (Selaginella moellendorffii), 5'ss of exon 1
--CTCGCCGGCGCTGCAGGCGTCGGATCTCAACGACTTCATCGCCCCCTCGCAGGACTGCATCATCTCCCTCAACA---AGGGCCCCTCCGCCCGCCGCCTTCCGgtgagac-tcctaccccgcgctcgctgattccctt-tctgccctaggctggggctggattggagctatgcccggcggcgctgctccggtgttggttggcttg
  |||  | ||  || ||    |||||||||||||||||||||| || |||||||  ||| || | || |||||||   ||     |   |   ||     | |  | |||  | | ||       || | ||||   |  | || |  ||| ||  | ||||  |   | |    |    |||                       
TTCTCCACCGCCTTGAAGCTCGCGGATCTCAACGACTTCATCGCACCATCGCAGGCTTGCGTCGTATCGCTCAACAGCAAGAAGATCGAGGTGAGCTATGgtgctataagaaattccactagaatttcacggattttttcctttggcacaggatgacggtggaa-gcgtcaaaattcactcgcgag---------------------