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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg...

Basic information

species Oryza sativa
transcript LOC_Os03g53720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G009843_T02 (Zea mays), 5'ss of exon 2
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgt--tcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg
|||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||   | ||| ||||| |||  || ||   ||   |    |  |     |  ||  | |   |||||   | |   |     |  |||  | |  | | | | || || ||||   
CGTCGGAGACTCCTTCAAGCAGGGCACCTACGTCGTGCAGTCTAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTTGCCTGGGACGAAGCCCATTCCgtacgtaatctaacatctcgagatatcttcgtgttcaattccaatgattcgtgttgtcgatctggatgcggtttatcctgttcgctgc-tgctg-tttgcct

upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G171987_T01 (Zea mays), 5'ss of exon 1
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgt--tcgaatcccttttgccccccccccccccccttaaatttcctcgtg-gaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg
||| || ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||   |||| ||||||  |     | |  |    | || |    |  |  |  | | || ||     |      |  | || |   || || | |    
CGTGGGAGACTCCTTCAAGCAGGGCGCCTACGTTGTGCAGTACAAGCTCGGATGGGGCCACTTCTCCACCGTATGGCTTGCCTGGGACACAGTCCACTCCgtgcgtgcccgaacccctttctcgatatctcttcgtattcaattccaatgattcgtgttgtcgatctgga-tgcggtttatccagttcgctgctgctgttc--

upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA13G21320.1 (Glycine max), 5'ss of exon 1
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcc-tagattcgtgatgatttgtgg-----
  |||| ||| | |||||    ||   ||||||||| |||   || ||||| |||||||| |||||||| ||||||||||| |||||||||   || || ||  ||||      || |  | | ||| ||| | | | || |||     ||| ||     ||    | ||  |   | | | | ||   | | | |  ||      
AATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttc------ctctctctctccctccctctcttaaactttttgtttgggatcttttttttttctttccctaatacgttgttttaggttaactcatgaaattc

upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA10G07430.2 (Glycine max), 5'ss of exon 1
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg--------
  |||| ||| | ||||     ||   ||||||||| |||   || ||||| |||||||| |||||||| ||||||||||| |||||||||   || || ||   |||       || |  | | | | | | | |||||   |  |  |   ||   |   ||||||       ||| | | ||   | | |||  ||         
AATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttc-------ttctctctctctctctctctcttaagccttttgtttcgatctcc-cccccccccccctaattcgttgttttaggtttattcttgaaatgtttt

upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA12G08900.1 (Glycine max), 5'ss of exon 1
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg-----
 ||||| ||| | |||||  | |||   ||| ||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||   | | || ||||   |       |||   | |    |       |    |||  |||   ||||    ||       |||   |       | |||     || ||||     
AGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgcca----tttttcaacacttttctgttttgtctttttttatcgacaaatgt-tattttgttagttttgttagaattgtccgttggagttggtggattcg

upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv08s0007g04220.t01 (Vitis vinifera), 5'ss of exon 1
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtgga---atgggcgttccccccttttcccttcctagattcgtgatgatttgtgg------
  |||| ||| | |||||| | ||    ||| |||| ||  ||||||||||||||||||| ||||| || |||||||| || |||||||||    ||||||| ||        |||   |||    | | |      |  ||||    |  ||   ||     ||     || |     |  | |||| |   |||||  |        
AATCGGCGACACCTTCAAGAACGGTCGGTACATCGTTCAAACCAAGCTCGGATGGGGCCATTTCTCAACTGTCTGGCTTGCTTGGGACACCTTAAACTCCgtacg--------cctcccgccatttctctctttgtgtgtattttacggatgacaaataattattattttctatgaatgttgt-gattgggagtgattaatttttaaca

upper sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
lower sequence: EDO99637 (Chlamydomonas reinhardtii), 5'ss of exon 2
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttcccccct--tttcccttcctagattcgtgatgatttgtgg
               |||   || ||| |||  ||||| |   |||||||| ||||||||||| || |||||||||||||     ||  |||        | | || |    | ||   |   | |        |   |      || | || |  |    |   || |  ||||   |||    | |  |   |       
---------------CAAC--GGACGC-TACACCGTGCTGAAGAAGCTCGGCTGGGGCCACTTTTCGACCGTCTGGCTCGTGCACGATGCCGA--GACGGGCGAGTACCGCGCGCTAAAGgtgcgcgatattggctgcagggggact-gcgggagagctcctagaccttaatttcgtgtcccccctgcccgcccag------