1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCGTCAAGCTCGTCCCCCACAAGCGCCCCCCTCCTCCTCCCCCCGACCAGTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagtttttttcactcctttcctccctccgtctccatctctgtctgcatcagaagaagaggaggaagaagatttcagaattcagatccggttttgcacg...
species | Oryza sativa |
transcript | LOC_Os03g52630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|58664223|gb|CK052909.1|CK052909
genomic: CCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|58669612|gb|CK058298.1|CK058298
genomic: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|58609592|gb|CK037625.1|CK037625
genomic: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|25797867|gb|CA753828.1|CA753828
genomic: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|29634446|gb|CB639455.1|CB639455
genomic: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: CCCAGGACCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|58665452|gb|CK054138.1|CK054138
genomic: CCCAGG-CCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: CACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|29674435|gb|CB670710.1|CB670710
genomic: CACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: TTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCAEST: gi|58662741|gb|CK051427.1|CK051427
genomic: TTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
EST: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGTGGGGAATTCTTGCEST: gi|58669114|gb|CK057800.1|CK057800
genomic: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAG-GGGGAATTCTTGC
EST: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGAT CTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
genomic: GTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagttttt ... tgaatgtcagCTGGTCCGCTGCCGAAGCATAACGGCGTCAGCTGGAGGGGGAATTCTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGTCAAGCTCGTCCCCCACAAGCGCCCCCCTCCTCCTCCCCCCGACCAGTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagtttttttcactcctttcctccctccgtctccatctctgtctgcatcagaagaagaggaggaagaagatttcagaattcagatccggttttgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggagg