1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCGAGGCTGACGGCGGTGGCGCAGGACCTGGAGCTTCGCCAGCGCACGGCGCTCGGCGTCCTCGGCGCCGCCACGGAGCCGGAGCTGGACCAGTTCATGgtgagctcgcaatctctcactctctttgttgctcgccttcctcttcgatatcttgagctcgctcgccggcggcgtgcgtgtgcag
species | Oryza sativa |
transcript | LOC_Os03g51690.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTACAGGGAGGAGCTGACGAGGCCGEST: gi|58685503|gb|CK074190.1|CK074190
genomic: GGAGCTGGACCAGTTCATGgtgagctcgc ... gcgtgtgcagGAGGCGTACCACGAGATGCTGGTGAAGTACAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGTCCTCGGCGCCGCCACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTACAGGGAGGAGCTGACGAGGCCGEST: gi|58669450|gb|CK058136.1|CK058136
genomic: CGCTCGGCGTCCTCGGCGCCGCCACGGAGCCGGAGCTGGACCAGTTCATGgtgagctcgc ... gcgtgtgcagGAGGCGTACCACGAGATGCTGGTGAAGTACAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGTCCTCGGCGCCGCCACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTACAGGGAGGAGCTGACGAGGCCG
genomic: CGCTCGGCGTCCTCGGCGCCGCCACGGAGCCGGAGCTGGACCAGTTCATGgtgagctcgc ... gcgtgtgcagGAGGCGTACCACGAGATGCTGGTGAAGTACAGGGAGGAGCTGACGAGGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGAGGCTGACGGCGGTGGCGCAGGACCTGGAGCTTCGCCAGCGCACGGCGCTCGGCGTCCTCGGCGCCGCCACGGAGCCGGAGCTGGACCAGTTCATGgtgagctcgcaatctctcactctctttgttgctcgccttcctcttcgatatcttgagctcgctcgccggcggcgtgcgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA