1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTAGCATAAGATGGCTGACGCCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtttggatctcagggtggtttccgtttaccgaaatgctgcatttcttggtagcaaaactgaggtggtttgtgtcag
species | Oryza sativa |
transcript | LOC_Os03g50885.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58671237|gb|CK059923.1|CK059923
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGTGCTGTCTTCCCCAGCATTGTCEST: gi|58599400|gb|CK009928.1|CK009928
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: GAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58677367|gb|CK066054.1|CK066054
genomic: GAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|11610538|gb|AU166214.1|AU166214
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58610538|gb|CK038250.1|CK038250
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATAT-CAGCCCCTCGTCTGCGATAATGGAACTGGTATGGGCGAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGGCTGTCTTCCCCAGCATTGTEST: gi|4968767|gb|AU065671.1|AU065671
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCA-GGGCTGTCTTCCCCAGCATTGT
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|88719767|gb|CI743277.1|CI743277
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: GATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58589384|gb|CF987692.1|CF987692
genomic: GATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58596324|gb|CK006852.1|CK006852
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58675220|gb|CK063907.1|CK063907
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58653290|gb|CK041970.1|CK041970
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCANGGCTGTCTTCCCCAGCATTGTCEST: gi|396941638|gb|HO188295.1|HO188295
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|66913140|gb|CX099988.1|CX099988
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCEST: gi|58661439|gb|CK050119.1|CK050119
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
EST: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAG GCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
genomic: CCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtt ... tttgtgtcagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGCATAAGATGGCTGACGCCGAGGATATCCAGCCCCTCGTCTGCGATAATGGAACTGGTATGGTCAAGgtaagctgtttggatctcagggtggtttccgtttaccgaaatgctgcatttcttggtagcaaaactgaggtggtttgtgtcag
- - - - - - - - - - - GAGGAT