1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCCCGCTTCTCCCCTCTCTAAAACCCTAGTTCTTCTCGGTCGCTCCGCCGCCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAGgtgagtgggtctccgactaccccgcccgcttcgttttgttctatcagttttggggggttttggagaggttgatgtgatgtgggattggtagtttaatccg...
species | Oryza sativa |
transcript | LOC_Os03g50620.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCATGGGGTAGGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAG TCGACCTATAGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACAEST: gi|88304971|gb|CI671232.1|CI671232
genomic: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAGgtgagtgggt ... tgctgtgcagTCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACA
EST: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAG TCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGGGGGTAGGAAAEST: gi|88695402|gb|CI737905.1|CI737905
genomic: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAGgtgagtgggt ... tgctgtgcagTCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACA
EST: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAG TCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACAEST: gi|58659859|gb|CK048539.1|CK048539
genomic: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAGgtgagtgggt ... tgctgtgcagTCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACA
EST: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAG TCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACA
genomic: CCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAGgtgagtgggt ... tgctgtgcagTCGACCTATTGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCGCTTCTCCCCTCTCTAAAACCCTAGTTCTTCTCGGTCGCTCCGCCGCCGCCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCCGGGAGCGGCAAGgtgagtgggtctccgactaccccgcccgcttcgttttgttctatcagttttggggggttttggagaggttgatgtgatgtgggattggtagtttaatccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC