1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTCGACGGACCTGGGGCCTGAGTTGCAAAATAAACTGCACCATGTTGTCCTGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAGgcaagttattattgaggatttacacttaagtcatctgctgcacttctttcaatattcgttatcgtattttatagtgtaaactataaagcattggtggccc...
species | Oryza sativa |
transcript | LOC_Os03g49420.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAG GCACACGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGATEST: gi|571970|gb|D41481.1|D41481
genomic: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAGgcaagttatt ... atgagttcagGCACACGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGAT
EST: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAG GCACACGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGATEST: gi|569698|gb|D40547.1|D40547
genomic: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAGgcaagttatt ... atgagttcagGCACACGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGAT
EST: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAG GCACACGCAGCTTCTG-GANTTCTAAACTTCAGCGAAAACTGCAGGCCTGAEST: gi|29629840|gb|CB634849.1|CB634849
genomic: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAGgcaagttatt ... atgagttcagGCACACGCAGCTTCTGCGA-TTCTAAACTTCAGCGAAAACTGCAGGCCTGA
EST: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAG GCACACGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGAT
genomic: TGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAGgcaagttatt ... atgagttcagGCACACGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGACGGACCTGGGGCCTGAGTTGCAAAATAAACTGCACCATGTTGTCCTGCCTGCATTGGCTTCATCCATGGATGATTTCCAGAACCCGCGCGTACAGgcaagttattattgaggatttacacttaagtcatctgctgcacttctttcaatattcgttatcgtattttatagtgtaaactataaagcattggtggccc
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