1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTATTGTTCATCATCCTCCTCCTCATAGCTGACCAAATCTCTGCTGTGACAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttccatcttgctcgaattttttatcaccccatctgcatcatttggtctctgttggttgcagcagaagaaaaaatctatttttttttgtgtgca...
species | Oryza sativa |
transcript | LOC_Os03g47740.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88452896|gb|CI574443.1|CI574443
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88696270|gb|CI739845.1|CI739845
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATAAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88693943|gb|CI737981.1|CI737981
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88742178|gb|CI765686.1|CI765686
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88388095|gb|CI590371.1|CI590371
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88735320|gb|CI758828.1|CI758828
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88825079|gb|CI775644.1|CI775644
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|29644388|gb|CB649395.1|CB649395
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88739888|gb|CI761398.1|CI761398
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88430485|gb|CI569508.1|CI569508
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|66915032|gb|CX101880.1|CX101880
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|38473104|gb|CF957236.1|CF957236
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: TGCCTCCCATGA-GAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCT-AGCTGATGAAGGEST: gi|29646229|gb|CB651236.1|CB651236
genomic: TGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: AGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCACG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGEST: gi|88729066|gb|CI752576.1|CI752576
genomic: AGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCA-Ggtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88734602|gb|CI758110.1|CI758110
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88735112|gb|CI758620.1|CI758620
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88426412|gb|CI576654.1|CI576654
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88301197|gb|CI594723.1|CI594723
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88456124|gb|CI567690.1|CI567690
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88371271|gb|CI600119.1|CI600119
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGAAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGGEST: gi|88371465|gb|CI602643.1|CI602643
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
EST: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAG TGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
genomic: CAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttc ... cgtctttcagTGTGATTACAAAGCAAGGAACCCTCCTACCGCGTCGCTGAGCTGATGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATTGTTCATCATCCTCCTCCTCATAGCTGACCAAATCTCTGCTGTGACAGCAATCTCTGCTGCTTGGTTCTGCCTCCCATGAGGAGCACACCATCAGgtctcccttccatcttgctcgaattttttatcaccccatctgcatcatttggtctctgttggttgcagcagaagaaaaaatctatttttttttgtgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat