1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CACGCCGCGGATCCGCCTCGCGCTCGAGTACCTCTACCTCGCCGGCGCCGTCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAGgtgagcatcccgcccctcctcgcccttcttcgtcttctgcccgtgcttgtactgcgcgcgttcgtgctagcctgggtgttgcgaattttgtgcgaactgc...
species | Oryza sativa |
transcript | LOC_Os03g45770.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAG CCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTTEST: gi|88692548|gb|CI736123.1|CI736123
genomic: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAGgtgagcatcc ... tcatgtgaagCCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTT
EST: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAG CCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTTEST: gi|88242779|gb|CI242628.1|CI242628
genomic: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAGgtgagcatcc ... tcatgtgaagCCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTT
EST: ATGCACACCAACTTCGTGCAGCAG CCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTT
genomic: ATGCACACCAACTTCGTGCAGCAGgtgagcatcc ... tcatgtgaagCCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGCCGCGGATCCGCCTCGCGCTCGAGTACCTCTACCTCGCCGGCGCCGTCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAGgtgagcatcccgcccctcctcgcccttcttcgtcttctgcccgtgcttgtactgcgcgcgttcgtgctagcctgggtgttgcgaattttgtgcgaactgc
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