1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGCAGCCATGGGCGCCAGCCGGAAGCTGCAGGGCGAGATCGACCGCGTCCTCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactcccccactttccccctccccacggcggcccgacccccccccccctccctcgttttctcctccgtcgaattcgtctccccctcctgatgctgctttcggagaggttttggtttgtccctctgagattttgtttttttgtttcgctgctgcggcggtggggcttgtacag
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAG GTCTACGACACCGCAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTEST: gi|29667065|gb|CB663340.1|CB663340
genomic: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactccccc ... gcttgtacagGTCTACGACACCG-AGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCT
EST: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAG GTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTCEST: gi|88696094|gb|CI739669.1|CI739669
genomic: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactccccc ... gcttgtacagGTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTC
EST: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAG GTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTCEST: gi|29645498|gb|CB650505.1|CB650505
genomic: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactccccc ... gcttgtacagGTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTC
EST: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAG GTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTCEST: gi|117216962|gb|CT845285.1|CT845285
genomic: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactccccc ... gcttgtacagGTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTC
EST: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAG GTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTCEST: gi|58658862|gb|CK047542.1|CK047542
genomic: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactccccc ... gcttgtacagGTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTC
EST: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAG GTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGGCGACCTC
genomic: TCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactccccc ... gcttgtacagGTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGCCATGGGCGCCAGCCGGAAGCTGCAGGGCGAGATCGACCGCGTCCTCAAGAAGGTCCAGGAGGGCGTCGACGTCTTCGACAGCATCTGGAACAAGgcactcccccactttccccctccccacggcggcccgacccccccccccctccctcgttttctcctccgtcgaattcgtctccccctcctgatgctgctttcggagaggttttggtttgtccctctgagattttgtttttttgtttcgctgctgcggcggtggggcttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG