1 5' 3' | 2 5' 3' |
GGGTTCGGCGGCGCGCTCCTCCTCGCCGGCGCGCTGAGCGCCAGGGCCTTCGCGCGCGGCCACCCCAGCGGCTCCCTCTTCGCCGCCGTCCTCCAGACTGgtccgtttctgctagttttgctacagtgctactcccccccatcctccatccatcccctccgttttattgttttgctcatttcgacatggatttagtaccg...
species | Oryza sativa |
transcript | LOC_Os03g38790.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCGCGCGGCCACCCCAGCGGCTCCCTCTTCGCCGCCGTCCTCCAGACTG TTTGTGCTGTAGCATTAACTGTCGTTATGGGAATAAGATACATCAAAACAAEST: gi|88963034|gb|CI025520.1|CI025520
genomic: CGCGCGCGGCCACCCCAGCGGCTCCCTCTTCGCCGCCGTCCTCCAGACTGgtccgtttct ... ttttgaacagTTTGTGCTGTAGCATTAACTGTCGTTATGGGAATAAGATACATCAAAACAA
EST: CGCGCGCGGCCACCCCAGCGGCTCCCTCTTCGCCGCCGTCCTCCAGACTG TTTGTGCTGTAGCATTAACTGTCGTTATGGGAATAAGATACATCAAAACAA
genomic: CGCGCGCGGCCACCCCAGCGGCTCCCTCTTCGCCGCCGTCCTCCAGACTGgtccgtttct ... ttttgaacagTTTGTGCTGTAGCATTAACTGTCGTTATGGGAATAAGATACATCAAAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTCGGCGGCGCGCTCCTCCTCGCCGGCGCGCTGAGCGCCAGGGCCTTCGCGCGCGGCCACCCCAGCGGCTCCCTCTTCGCCGCCGTCCTCCAGACTGgtccgtttctgctagttttgctacagtgctactcccccccatcctccatccatcccctccgttttattgttttgctcatttcgacatggatttagtaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc
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