Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCCGCCTCCGCCTCCGCCTCCTCGTCGGAGCAGCGAGCCGCTGCTCCTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgcagatccctcgcagggtttcgattcgattcgattcgattctcctcgatctgatggtttttgttcatgtag

Basic information

species Oryza sativa
transcript LOC_Os03g38000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g38000.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G099352_T06 (Zea mays), 5'ss of exon 1
-CGCCGCCGCCTCCGCCTCCGCCTCCTCGTCGGAGCAGCGAGCCGCTGCTCCTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgcagatccct---cgcagggtttcgattcgattcgat--tcgattctcctcgatctgatggtttttgttcatgtag
 |    || |    ||   ||||| |||| |   || ||  |     |||||   || ||  ||  || |||||||||||||||||||||||||||||||||||||     | | |||   ||||| | | |  | |    ||    |||||    || || ||   |||  | | |  |||||
TCAAAACC-CTAGAGCTCTCGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatct-gacct--cggtgctcggttttgtag

upper sequence: LOC_Os03g38000.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G074300_T04 (Zea mays), 5'ss of exon 1
-CGCCGCCGCCTCCGCCTCCGCCTCCTCGTCGGAGCAGCGAGCCGCTGCTCCTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacg-gtgcagatccct--cgcagggtt-tcgattcgattcgattcgattctcctcgatctgatg-gtttttgttcatgtag
 |    |||   | |||  ||||| |||| ||  || |         |||||   || ||| ||  || ||||||||||||||||||||||||||||||||||||| | ||   |||    || || | |  |    |   ||    |        | |||||||   ||  |  |    ||||
CCAAAACCGTAGC-GCCCTCGCCTGCTCGCCGCCGCCGTCGTTGCGAGCTCCCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagctcctcctaaacgtagcgctaccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtag

upper sequence: LOC_Os03g38000.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G099352_T04 (Zea mays), 5'ss of exon 1
-------------------------------CGCCGCCGCCTCCGCCTC-CGCCTCCTCGTCGGAGCAGCGAGCCGCTGCTCCTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgcagatccct---cgcagggtttcgattcgattcgat--tcgattctcctcgatctgatggtttttgttcatgtag
                               | |     |||    ||| ||||| |||| |   || ||  |     |||||   || ||  ||  || |||||||||||||||||||||||||||||||||||||     | | |||   ||||| | | |  | |    ||    |||||    ||      | ||                
TCGCGCCGCCGCTCCCCTCCCAACCCACTAGCTCAAAACCCTAGAGCTCTCGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAAccatggcgacccagatcagcaagaagaagaaggtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgc---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88827953|gb|CI778518.1|CI778518
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|86910098|gb|CI292955.1|CI292955
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|38470489|gb|CF954620.1|CF954620
EST:     CTTCTCCTGCAGCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTTAGCGATGGCGTGTTCTACGCGGAGCT-AACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88726015|gb|CI749670.1|CI749670
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58597442|gb|CK007970.1|CK007970
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58602695|gb|CK013223.1|CK013223
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|5003183|gb|AU068292.1|AU068292
EST:     TNTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAG-TGAACGAGATGCTGACGCGG
genomic: T-TCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58661359|gb|CK050039.1|CK050039
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|38475947|gb|CF960080.1|CF960080
EST:     CCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|33673710|gb|CF301949.1|CF301949
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAATAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAAATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88578165|gb|CI674802.1|CI674802
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|86830469|gb|CI291946.1|CI291946
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|2427682|gb|C72145.1|C72145
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAG-TGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58592854|gb|CF991162.1|CF991162
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAAAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58587437|gb|CF985745.1|CF985745
EST:     CAGATCAGCAAAAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88726553|gb|CI750208.1|CI750208
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|5002939|gb|AU068048.1|AU068048
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGA-CTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|86904790|gb|CI310583.1|CI310583
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58604000|gb|CK014528.1|CK014528
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|10794835|gb|AU108801.1|AU108801
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGNAACGAGATGCTGACGCG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTG-AACGAGATGCTGACGCG
EST: gi|5003749|gb|AU068898.1|AU068898
EST:     TNTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAG-TGAACGAGATGCTGACGCGG
genomic: T-TCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|5003155|gb|AU068264.1|AU068264
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAG-TGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|8335471|gb|BE040403.1|BE040403
EST:     GGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: GGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|86848754|gb|CI294030.1|CI294030
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|218483756|gb|FG944212.1|FG944212
EST:     TTCTCCTCCGACGA-CAGCCATGGCGACCCAGATCAGCAAAAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: TTCTCCTCC-ACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|11172966|gb|AU164546.1|AU164546
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88453901|gb|CI686696.1|CI686696
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|86909409|gb|CI304657.1|CI304657
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88851625|gb|CI674827.1|CI674827
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88721459|gb|CI744758.1|CI744758
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|33660163|gb|CF291130.1|CF291130
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAGGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88333244|gb|CI642281.1|CI642281
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88827148|gb|CI777713.1|CI777713
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58595693|gb|CK006221.1|CK006221
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88358576|gb|CI617662.1|CI617662
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATAAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|87011363|gb|CI289633.1|CI289633
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58600878|gb|CK011406.1|CK011406
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88453887|gb|CI698614.1|CI698614
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58595924|gb|CK006452.1|CK006452
EST:     CCAGCCA-GGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58599076|gb|CK009604.1|CK009604
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|88581380|gb|CI698360.1|CI698360
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
EST: gi|58686611|gb|CK075298.1|CK075298
EST:     CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG
genomic: CTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgca ... gttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCGCCGCCTCCGCCTCCGCCTCCTCGTCGGAGCAGCGAGCCGCTGCTCCTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacggtgcagatccctcgcagggtttcgattcgattcgattcgattctcctcgatctgatggtttttgttcatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG