1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCCTCTGCCACCGCTCGTCTTCCTCCCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcccgctcgctcgctcgctctctcgatccccattccggcaagcgttcgcctctgcttccccaccgcgcgtgccggcgccgtagtttctcgacc...
species | Oryza sativa |
transcript | LOC_Os03g37970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|218497465|gb|FG944659.1|FG944659
genomic: CGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: CGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|88675804|gb|CI729376.1|CI729376
genomic: CGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGNCGCGCAG GTAACAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTCATCCCCAAEST: gi|38471417|gb|CF955548.1|CF955548
genomic: CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: CGCTCTCCTCTTCGCTCCGCCGCGCAG GTCAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|218479989|gb|FG966405.1|FG966405
genomic: CGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: CGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|58675597|gb|CK064284.1|CK064284
genomic: CGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: GCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|88313010|gb|CI592294.1|CI592294
genomic: GCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCAGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|58684746|gb|CK073433.1|CK073433
genomic: CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: TTCGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|58695028|gb|CK083715.1|CK083715
genomic: TTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: TCGCTCTCCTCTTCGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|218482999|gb|FG956127.1|FG956127
genomic: TCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: CCTCTTCGCTCCGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAAEST: gi|58586914|gb|CF985222.1|CF985222
genomic: CCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: TCGCTCATCCTCTTCGGTCGGCCGCGCAG GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: TCGCTC-TCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCTCTGCCACCGCTCGTCTTCCTCCCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcccgctcgctcgctcgctctctcgatccccattccggcaagcgttcgcctctgcttccccaccgcgcgtgccggcgccgtagtttctcgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccggcg