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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAGGAGTGGTCGGGCGAGGCGGTCGTCTACGTCAACGGCGTCCGCCGCGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctctctatctcctcaatcccttctcattctgcatgcgccgggattggcacgcaaatccgatggacttccctgcatttttagtatatatatatat...

Basic information

species Oryza sativa
transcript LOC_Os03g31550.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88403382|gb|CI573105.1|CI573105
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88366478|gb|CI610623.1|CI610623
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAAGAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88364694|gb|CI612509.1|CI612509
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTTGGTCTTCCTGGAACAAATCTTGGATGTGGTGAAGGTGGCTGTGGA
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATT-GGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGA
EST: gi|88404507|gb|CI580943.1|CI580943
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88299845|gb|CI577347.1|CI577347
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88385624|gb|CI566486.1|CI566486
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATAC-TCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGATGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88367173|gb|CI563937.1|CI563937
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGGACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88314018|gb|CI600020.1|CI600020
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88368103|gb|CI574985.1|CI574985
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88728262|gb|CI751772.1|CI751772
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88421291|gb|CI569136.1|CI569136
EST:     CGTGCTCCCCGACGGTCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88410918|gb|CI578724.1|CI578724
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88430101|gb|CI565114.1|CI565114
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88692572|gb|CI736147.1|CI736147
EST:     CGTGCTCCCCGANGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88694482|gb|CI738520.1|CI738520
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88353883|gb|CI634674.1|CI634674
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88423734|gb|CI617086.1|CI617086
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88395413|gb|CI611330.1|CI611330
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88350340|gb|CI623278.1|CI623278
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88398129|gb|CI585632.1|CI585632
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88411227|gb|CI564348.1|CI564348
EST:     CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCACAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: gi|88391562|gb|CI600751.1|CI600751
EST:     GTGCTCCCCGACGGCCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG                         ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: GTGCTCCCCGACGGCC-TCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG