1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctccccccgttctccctccccttccccacccgcctggcccgcctccatctcccccctctcgtcgctcgatctcattcgagatccgttcggatg...
species | Oryza sativa |
transcript | LOC_Os03g25980.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|58663117|gb|CK051803.1|CK051803
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|88403860|gb|CI611515.1|CI611515
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|58685225|gb|CK073912.1|CK073912
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|33677252|gb|CF305491.1|CF305491
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|88430204|gb|CI565217.1|CI565217
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|88394871|gb|CI607598.1|CI607598
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCEST: gi|58694070|gb|CK082757.1|CK082757
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATC
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|88329781|gb|CI651447.1|CI651447
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGEST: gi|58682903|gb|CK071590.1|CK071590
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
EST: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTC ACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
genomic: ACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctc ... ttctttgcagACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaagccctccccccgttctccctccccttccccacccgcctggcccgcctccatctcccccctctcgtcgctcgatctcattcgagatccgttcggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctc