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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCGCCGCCGCCGGAGCCGGAGCCGGAGCCGGTGGTGATCCACGCGTGGTCGGCGCCGCGCTCCCTCAGCACCAGCCTCATGTACTCCTTCGCCCAGgtccgcgcctcctccttcgcctcgcctcggcctcgcccaccccgctgcgcacgggggatccccctgggccggcggcgagtcggcgaaccgggggccaccgccgcaaccagctgcattacctgcacggccggctcgcttcccccgtttcgctttctgatgattttttttttaattcttgtgtttgggatag

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G108416_T01 (Zea mays), 5'ss of exon 1
GCCGCCGCCGCCGCCGGAGCCGGAGCCGGAGCCG---GTGGTGATCCACGCGTGGTCGGCGCCGCGCTCCCTCAGCACCAGCCTCATGTACTCCTTCGCCCAGgtccgcgcctcctccttcgcctcgcctcggcctcgcccaccccgctgcgcacgggggatccccctgggccggcggcgagtcggcgaaccgggggccaccgccgcaaccagctgcattacctgcacggccggctcgcttcccccgtttcgctttctgatgattttttttttaattcttgtgtttgggatag
 |||| |  ||    || | ||||| ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||   |||| ||||| ||||  || || |        |   |    | |||  ||       | | |||   |  ||    |||   ||                                                                                       
-CCGCGG--GCGAATGGCGTCGGAGGCGGAGTCGCCCGTGGTGATCCACGCGTGGTCGGCGCCGCGCTCCCTCAGCACCAGCCTCATGTACTCCTTCGCCCAGgtctgctcctcctcct---cctctcctcgtcctcctcctcctcctcctctgctctgttcgcgcctcagctcatcatgcggcgggagaggggatatcacaaacg---------------------------------------------------------------------------------------

upper sequence: LOC_Os03g24460.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 1
GCCGCCGCCGCCGCCGGAGCCGGAGCCGGAGCCGGTGGTGATCCACGCGTGGTCGGCGCCGCGCTCCCTCAGCACCAGCCTCATGTACTCCTTCGCCCAGgtccgcgcctcctccttcgcctcgcctcggcctcgcccaccccgctgcgcacgggggatccccctgggccggcggcgagtcggcgaaccgggggccaccgccgcaaccagctgcattacctgcacggccggctcgcttcccccgtttcgctttctgatgattttttttttaattcttgtgtttgggatag
   |     | | |||    |   | | || |||| |||||| ||| | ||||| || ||  | || |||||||||||||||||||||||||| || ||||| |    | |  | ||  |||  | ||    | | | |     |   |           | |    |     |   |  |    ||||      ||   | ||     |||                                                                              
TGAGAGTTTGACACCGTCATCAATGGCAGAACCGGAGGTGATTCACTCATGGTCTGCACCAAGATCTCTCAGCACCAGCCTCATGTACTCCTTTGCTCAGgtactatacccaactttttcctatcttc----ttgacaaattttccaagtgttaa-----ctctaaagattatgatcatccaa--aaccaaatctcaattctgc--tttgctc-----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29621729|gb|CB626740.1|CB626740
EST:     GGTCGGCGCCGCGCTCCCTCAGCACCAGCCTCATGTACTCCTTCGCCCAG                         AGGGATGACATGGAGGTGCTCGACGAGCCGCTCTACGCTAATTTCCTGCGC
genomic: GGTCGGCGCCGCGCTCCCTCAGCACCAGCCTCATGTACTCCTTCGCCCAGgtccgcgcct ... tttgggatagAGGGATGACATGGAGGTGCTCGACGAGCCGCTCTACGCTAATTTCCTGCGC