Sequence
atgc intronic sequence ATGC exonic sequenceGTCAAGTGCAAAACCAGTGCTTGATCCTGCATTTCAAGGAGTTGGCCAAAAACCgtatccttctttaaatgcctttatggtttgttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g24220.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G081322_T01 (Zea mays), 5'ss of exon 2
----------------------------------------------GTCAAGTGCAAAACCAGTGCTTGATCCTGCATTTCAAGGAGTTGGCCAAAAACCgtatccttctt-------------taaatgcctttatgg----------tttgttttagttgtcttcttt-------------tagaaatctacgtacaagagtt--tctatccttttatgctg----ttagccccttaattaaaatatag
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TGCGAGCCCAAGTAAAGTTCTGTAATTAGTCACATTCCTGCACAATGTCGACTGCGAAAGTGGTGCTTGAGCCTGCATTTCAAGGAGCTGGCCATAAACCgtatccctactactaccataccagtagatggcttcatgcaagctgccaccttattttagctgttttttttctctttctgtgtcttcggttccacacgcaagagttgtcttttctctttatgttggctatgtgctccttgacttgagcacag
upper sequence: LOC_Os03g24220.3 (Oryza sativa), 5'ss of exon 1
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 2
---------------------------------------------GTCAAGTG-CAAAACCAGTGCTTGATCCTGCATTTCAAGGAGTTGGCCAAAAACCgtatccttct--ttaaatgcct---ttatggtttgttttagttgtcttct------tttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatag-
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TACATAAATTTTCCCTGACACACAGAAAAAGAGGATTTGACTGTTATACAATGTCAACAAAAGTGTTGGATCCTGCATTTCAAGGAGCTGGCCAGAAACCgtatcctttcagctacataactactttcccattagtgtttgatatcaaatgagcaatctaattatgttcttcctgaatgtttggactgtttgagcttgtgaaccttaacttttgttattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29674447|gb|CB670722.1|CB670722EST: TTGATCCTGCATTTCAAGGAGTTGGCCAAAAACC TGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAA
genomic: TTGATCCTGCATTTCAAGGAGTTGGCCAAAAACCgtatccttct ... taaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAAGTGCAAAACCAGTGCTTGATCCTGCATTTCAAGGAGTTGGCCAAAAACCgtatccttctttaaatgcctttatggtttgttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatag
- - - - - - - - - - - - - - - - - AAGGAG