1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGGAGCCACGACAAGAGGCTGGGCGAGCTCGCTTCACTGGTGAATCTAGAAGAGGAGAAACTCGCCGAGCTGCGGAAGGCGGCTGAGCCACCCAAGGAGgtatcgatatcgttacgtttaccattcctttgtttttatgttatattattttcatagttggtgaatgtgaagatcacaactcactagtggtaaagtgtgc...
species | Oryza sativa |
transcript | LOC_Os03g22400.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCCACCCAAGGAG GACCTGTCTGAACTCTTTACACCTCTAACTGCTGAAGAGGAAAATGAAGTTEST: gi|29627373|gb|CB632384.1|CB632384
genomic: CTGAGCCACCCAAGGAGgtatcgatat ... actactccagGACCTGTCTGAACTCTTTACACCTCTAACTGCTGAAGAGGAAAATGAAGTT
EST: AAGAGGAGAAACTCGCCGAGCTGCGGAAGGCGGCTGAGCCACCCAAGGAG GACCTGTCTGAACTCTTTACACCTCTAACTGCTGAAGAGGAAAATGAAGTT
genomic: AAGAGGAGAAACTCGCCGAGCTGCGGAAGGCGGCTGAGCCACCCAAGGAGgtatcgatat ... actactccagGACCTGTCTGAACTCTTTACACCTCTAACTGCTGAAGAGGAAAATGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAGCCACGACAAGAGGCTGGGCGAGCTCGCTTCACTGGTGAATCTAGAAGAGGAGAAACTCGCCGAGCTGCGGAAGGCGGCTGAGCCACCCAAGGAGgtatcgatatcgttacgtttaccattcctttgtttttatgttatattattttcatagttggtgaatgtgaagatcacaactcactagtggtaaagtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG