1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CCCGGAGGCTGTGCGAGGATGAGACGGGTGGTTCTCGGCGTCGTGCTGCTGCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtaccatatgacccaaccatttaatcagctagtgttaagatcgttttgttttctcagtcttgaacgattggatttattgattttgaggagggaaag...
species | Oryza sativa |
transcript | LOC_Os03g21230.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|88400569|gb|CI595990.1|CI595990
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|88431457|gb|CI579574.1|CI579574
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|29672175|gb|CB668450.1|CB668450
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|88407222|gb|CI581309.1|CI581309
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|117246958|gb|CT843762.1|CT843762
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|29674514|gb|CB670789.1|CB670789
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|88452866|gb|CI574413.1|CI574413
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGT-CGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|88430841|gb|CI571831.1|CI571831
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGTEST: gi|58655495|gb|CK044175.1|CK044175
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
EST: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACA CATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
genomic: GCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtacca ... ttggttgtagCATCTGTTCTCCGCGCGTTGATGGATCAGTGGCAGAACGCGCCGCCAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGGAGGCTGTGCGAGGATGAGACGGGTGGTTCTCGGCGTCGTGCTGCTGCTCTCGGTGTGCGTCCGAGCAAGCCATGCCGTGACGGATAGCCAGGACAgtgagtaccatatgacccaaccatttaatcagctagtgttaagatcgttttgttttctcagtcttgaacgattggatttattgattttgaggagggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggagg