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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTTGAAGAGGGTTTTGGAGGTGGAGGAAGAGGTGGTCGACGGCGACGAGGACGAGCTCGCCTCCCCGGAGGCCAAGCGCCGGCGAACTTTCATCAAgtgagtgaaaatggcattgcatttgggcatttcggttaagttcttgggattcatgagttgggttctgactgactgactgacgttttgtcccttgtcgttttcattgtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g18960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18960.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G006714_T01 (Zea mays), 5'ss of exon 1
TGGACTTGAAGAGGGTTTTGGAGGTGGAGGAAGAGGTGGTCGACGGCGACGAGGACGAGCTCGCCTCC---CCGGAGGCCAAGCGCCGGCGAACTTTCATCAAgtgagtgaaaatggcattgcatttgggcattt--cggttaagttcttgggattcatgagttgggttctgactgactgactgacgttttgtcccttgtcgttttcattgtgcag
   || ||||||||    | || |||||||| |||||||| ||||||||||||||||||||||||| |   || || ||||||||||| || || ||| || ||||||||| | |  | |     |   ||||||  ||  |  |  ||   |         |||| ||||||  | ||| | | | | ||| || ||  |               
---ACCTGAAGAGGACGCTTGACGTGGAGGAGGAGGTGGTGGACGGCGACGAGGACGAGCTCGCCTGCTGTCCCGACGCCAAGCGCCGCCGGACGTTCGTCGAgtgagtgagatttccgtgctgctgctgcatttgccgcgtgggcgctcaagtcc------ttggcttctgaacgcctg-ccgtcatcttgcccatttgcag-------------

upper sequence: LOC_Os03g18960.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G427418_T01 (Zea mays), 5'ss of exon 1
TGGACTTGAAGAGGGTTTTGGAGGTGGAGGAAGAGGTGGTCGACGGCGACGAGGACGAGCTCGCC------TCCCCGGAGGCCAAGCGCCGGCGAACTTTCATCAAgtgagtgaaaatggcattgcatttgg-gcattt-cggttaagttcttgggattcatgagt--tgggttctgactgactgactgacgttttgtcccttgtcgttttcattgtgcag
      ||||| |||   |||| |||||||| |||||||| ||||||||||| || |||||||||      | ||| || ||||||||||| || || | | |||||||||     ||  |  |||   ||  |||||| | |    ||    | | | | |   |  ||  ||||||| | | |  |     | || ||     | ||| |||||     
------TGAAGCGGGCGCTGGACGTGGAGGAGGAGGTGGTGGACGGCGACGAAGAGGAGCTCGCCGGCTGCTGCCCCGACGCCAAGCGCCGCCGGACGTCCGTCAAgtgagcttttatttccgtgccgctgctgcatttgctgccgcgtgggcgtggtgcctagttcttgccttctgac-gcccgtgttcgcctctgccctgccccatttgcattgcag--

upper sequence: LOC_Os03g18960.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G427418_T02 (Zea mays), 5'ss of exon 1
TGGACTTGAAGAGGGTTTTGGAGGTGGAGGAAGAGGTGGTCGACGGCGACGAGGACGAGCTCGCC------TCCCCGGAGGCCAAGCGCCGGCGAACTTTCATCAAgtgagtgaaaatggcattgcatttgg-gcattt-cggttaagttcttgggattcatgagt--tgggttctgactgactgactgacgttttgtcccttgtcgttttcattgt-gcag
      ||||| |||   |||| |||||||| |||||||| ||||||||||| || |||||||||      | ||| || ||||||||||| || || | | |||||||||     ||  |  |||   ||  |||||| | |    ||    | | | | |   |  ||  ||||||| | | |  |     | || ||     | ||| |||||  | ||
------TGAAGCGGGCGCTGGACGTGGAGGAGGAGGTGGTGGACGGCGACGAAGAGGAGCTCGCCGGCTGCTGCCCCGACGCCAAGCGCCGCCGGACGTCCGTCAAgtgagcttttatttccgtgccgctgctgcatttgctgccgcgtgggcgtggtgcctagttcttgccttctgac-gcccgtgttcgcctctgccctgccccatttgcattgcagtag