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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCATCAAGCTGGAGTGCCCGCGACTCGCTGAGATGGGCCTCGTCCCGCACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctccagatcccccctctagttcgcgtggcactttgtttctggtgcgagttttgatgtgttttgcttcttcttcttcttcttttttgtttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g18310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 1
GTCCATCAAGCTGGAGTGCCCGCGACTCGCTGAGATGGGCCTCGTCCCGCACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctccagatcccccctctagttcgcgtggcactttgtttctggtgcgagtttt-gatgtgttttgcttcttcttcttcttcttttttgtttgcag
 ||| ||||| | ||| ||||||  ||||| ||| | | ||||| ||| ||| |||||||||| ||||| || || ||| |||||||||||| ||||||||| |||||| |||| ||  |||||   |||||      |||    || |||  |||| |||  |||| | || || |||  |                 
CTCCGTCAAGTTAGAGAGCCCGCACCTCGCGGAGCTCGACCTCGCCCCCCACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccggatcgcc--tctagcctgcgtgatg---tgtgcgcggagcggatttttgattcgtttcgtttttttttccacgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88327536|gb|CI646726.1|CI646726
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|88393301|gb|CI618189.1|CI618189
EST:     CGTCCTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGTCTTGTGGGGGCTCAGTTGCATCGTC
genomic: CGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGA-CCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|88333451|gb|CI640483.1|CI640483
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|88313120|gb|CI592404.1|CI592404
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|88354896|gb|CI615777.1|CI615777
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|88329329|gb|CI653243.1|CI653243
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|2428327|gb|C72790.1|C72790
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC
EST: gi|88371525|gb|CI602703.1|CI602703
EST:     ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCC                         CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGAATCGTC
genomic: ACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctcca ... ttgtttgcagCTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTC