1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCGGACGAGCTCTCCGCGGCCATCCAGGATGGTCTGCGCCGCTGCCGAGGGGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaactggtttccggtgaagccgcgggggcgttgggctgtgggtttttttttttcagtatgctgaatctggtggctggttgctgatcgggtgcgggttcag
species | Oryza sativa |
transcript | LOC_Os03g17120.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|86901578|gb|CI308559.1|CI308559
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88433054|gb|CI569723.1|CI569723
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88358225|gb|CI605150.1|CI605150
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGGAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88720332|gb|CI743631.1|CI743631
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88826773|gb|CI777338.1|CI777338
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88720515|gb|CI743814.1|CI743814
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGACGGCGGCGTCACGCCGGCGAACGGGTTCAAGGCGGCGGGTATCTACEST: gi|88443537|gb|CI597004.1|CI597004
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCCGGCGGGTATCTAEST: gi|58662721|gb|CK051407.1|CK051407
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGC-GGCGGGTATCTA
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88358912|gb|CI619416.1|CI619416
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|29613226|gb|CB618239.1|CB618239
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88403888|gb|CI601298.1|CI601298
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGGGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88760985|gb|CI770541.1|CI770541
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88389112|gb|CI595346.1|CI595346
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGAGTCACGGCGGCGAAGGGGTTCAAGGCGGCCGGGTATCTAEST: gi|88392288|gb|CI612762.1|CI612762
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGC-GGGTATCTA
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|88741107|gb|CI764615.1|CI764615
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAG GTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
genomic: GGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaact ... gcgggttcagGTGGAAGGCGGCGTCACGGCGGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGACGAGCTCTCCGCGGCCATCCAGGATGGTCTGCGCCGCTGCCGAGGGGTTTATCTCCGCGGCGCCGATCCTCCTCCCCGACGGCCCGTGGAAGCAGgtgggtaactggtttccggtgaagccgcgggggcgttgggctgtgggtttttttttttcagtatgctgaatctggtggctggttgctgatcgggtgcgggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG