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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTCTTCCTCGTCCGCCTCCGGTCTAATCCGATTCAAACCCGCCGTTTCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattccgccgctcccgtgtttttttttttgatccatctccgtggtggtggatcgcgatcgcgtgtgtggggttgaggggggtttcgattttgtgg...

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88851974|gb|CI679532.1|CI679532
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58677155|gb|CK065842.1|CK065842
EST:     CAAGCTTGCTCTCCTCTCCCCCCGCAAGTCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: CAAGCTTGCTCTCCTCTCCCCCC-CAA-TCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|33658124|gb|CF280738.1|CF280738
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCA-G                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58665123|gb|CK053809.1|CK053809
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     TCC-AGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|25800080|gb|CA756041.1|CA756041
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88763168|gb|CI772724.1|CI772724
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88406887|gb|CI578415.1|CI578415
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     TCC-AGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     AATCCTTCCCTCCCGAGTGGCA-G                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: AATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88729590|gb|CI751393.1|CI751393
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58662662|gb|CK051348.1|CK051348
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58668375|gb|CK057061.1|CK057061
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88738635|gb|CI762143.1|CI762143
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58601617|gb|CK012145.1|CK012145
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNGATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGAGGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58682312|gb|CK070999.1|CK070999
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     CCTATGCTTGCTCTCCTCTCCTCCCCAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCCACCGGATGGCGCAGAACGACGCCATTGGCATCAGCAACGGGGAG
genomic: CC-AAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|86888864|gb|CI307922.1|CI307922
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58664972|gb|CK053658.1|CK053658
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88388345|gb|CI627884.1|CI627884
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88725549|gb|CI748808.1|CI748808
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88827428|gb|CI777993.1|CI777993
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88372446|gb|CI610769.1|CI610769
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58654932|gb|CK043612.1|CK043612
EST:     AATCCTTCCCTCCCGAGTGGCA-G                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: AATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|86898701|gb|CI292465.1|CI292465
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCA-G                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88370196|gb|CI585201.1|CI585201
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88730834|gb|CI754447.1|CI754447
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     AATCCTTCCCTCCCGAGTGGCA-G                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: AATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58664219|gb|CK052905.1|CK052905
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88350263|gb|CI623201.1|CI623201
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58661516|gb|CK050196.1|CK050196
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGTGCCAATGGCAGCAGCAACGGGGA
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAG-GCCAATGGCAGCAGCAACGGGGA
EST: gi|38476842|gb|CF960975.1|CF960975
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGGTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|14192538|gb|AU184749.1|AU184749
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58664364|gb|CK053050.1|CK053050
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88407211|gb|CI581298.1|CI581298
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88692084|gb|CI735659.1|CI735659
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|33676960|gb|CF305199.1|CF305199
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|163923610|gb|EG715331.1|EG715331
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCTGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     CTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: CTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88382988|gb|CI683086.1|CI683086
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58660955|gb|CK049635.1|CK049635
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58672357|gb|CK061043.1|CK061043
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58655602|gb|CK044282.1|CK044282
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCGCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     TCCAAGCTTGCTCTCCTCT-CCCCCCAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58661053|gb|CK049733.1|CK049733
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|33813747|gb|CF332760.1|CF332760
EST:     TCC-AGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58590704|gb|CF989012.1|CF989012
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCGCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88351656|gb|CI617381.1|CI617381
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58595983|gb|CK006511.1|CK006511
EST:     TCCAAGC-TGCTCTCCTCT--CCCCCAA--CTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|58666725|gb|CK055411.1|CK055411
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88410819|gb|CI578625.1|CI578625
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGAGGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88294549|gb|CI584675.1|CI584675
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88350787|gb|CI619045.1|CI619045
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGGGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|88371205|gb|CI597682.1|CI597682
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     TCCAAGCTTGCTCTCCTCTNNNNNNNAATCCTTCCCTCCCGAGTGGCAGG                         GTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG
genomic: TCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattc ... tgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTTTCTTCCTCGTCCGCCTCCGGTCTAATCCGATTCAAACCCGCCGTTTCCAAGCTTGCTCTCCTCTCCCCCCCAATCCTTCCCTCCCGAGTGGCAGGgtgagcattccgccgctcccgtgtttttttttttgatccatctccgtggtggtggatcgcgatcgcgtgtgtggggttgaggggggtttcgattttgtgg

- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC