Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGgtgagcgtttctgcttaaatgtaggttttggcatcctaaagtagatctttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g16570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16570.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G337425_T03 (Zea mays), 5'ss of exon 2
GTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGgtgagcgtttctgcttaaatgtaggttttggcatcctaaagtagatctttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag
|  | |  | ||   |  ||||||||| |||||||| ||||||||    |||||||||||||| |||||||| |||||||| || |||||||||||||||||||| |  ||||  | |                | ||||  ||   |||| ||||  ||| | ||||| ||||||  || || | |   |||  |  ||
GCAGCGTTTTGTGATCATCATGAGCTTTGTGTTCCGAGGGAGCAGGACCGACATCGAGGCCGGTGGCTTCCCAGGGTTCGCTCCCGAGCGCCGCGCCATGgtgagtg--tctgtctgag---------------cttaaaccag---ttttcttgtcctga-tgtctga-tcccattcgtttgtgtg--tttgcgtatag

upper sequence: LOC_Os03g16570.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 2
GTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGgtgagcgt------------------------ttctgcttaaatgtaggttttggcatcctaaagtagatc--tttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag
|  | | ||||| ||  ||||||||||||||||||| || ||||| |  |||||||||||||| |||||| | ||||||||||| ||||||||| |||||||||| ||                        ||||||| |||||||  |  ||| |   ||   || | |  |||  ||||  ||| | ||||| |||||| ||| || | |  ||||  || ||
GCAGCGTCTGGTGGGAACCATGAGCTTCGTGTTCCGAGGAAGCAGGGCCGACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATGgtgagtgtctgtctgctcaacccatgatgcatttctgctaaaatgtaactggtggtagtgtagcttaaaccggtttccttgtcctga-tgtctga-tcccatttgtatgtgtg--cttgagtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218484447|gb|FG955624.1|FG955624
EST:     ACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATG                         CGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTC
genomic: ACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGgtgagcgttt ... ttgtatgcagCGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTC