1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
CTACCGGGCCGACGTGGAGCTGAGCGGAGCGGCGGGGAGGGGGGGGGGGGTGGGGAGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccctaactcgctcggatccatttcgcgctgattcgtgtcgctgaagccctaaccggccttcttgttctccttcttccgcag
species | Oryza sativa |
transcript | LOC_Os03g14980.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGGGAGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAAAATAGEST: gi|88352344|gb|CI615598.1|CI615598
genomic: TGGGGAGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
EST: GGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAGEST: gi|88730409|gb|CI754022.1|CI754022
genomic: GGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
EST: GAGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAGEST: gi|88337088|gb|CI628174.1|CI628174
genomic: GAGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
EST: AGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAAAATAGEST: gi|88343434|gb|CI621802.1|CI621802
genomic: AGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
EST: GTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCAGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTACAATAGEST: gi|88719564|gb|CI743074.1|CI743074
genomic: GTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
EST: GGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAGEST: gi|88412321|gb|CI573597.1|CI573597
genomic: GGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
EST: GGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTG TGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
genomic: GGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccct ... tcttccgcagTGTGCGCCGTGCGGGACGGGGTCGGGTCGTTTTCTGTGACCTGTAGAATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCGGGCCGACGTGGAGCTGAGCGGAGCGGCGGGGAGGGGGGGGGGGGTGGGGAGGGGGGTGAGGGGAGATCCACGCGAGCTGATCTCTTCCGTGGTGgtaaagccctaactcgctcggatccatttcgcgctgattcgtgtcgctgaagccctaaccggccttcttgttctccttcttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT