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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCCGATCTAAGATCCATCCGATCCAGGCCATGGCGGCGACCATCCAGAGCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcgggtccagtttcgttctgtctagggcgtcgcggcgattgaatcgggtgctttcttagcgcgatgccgcgatcttggtctgttggttagagc...

Basic information

species Oryza sativa
transcript LOC_Os03g14450.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14450.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA16G32960.1 (Glycine max), 5'ss of exon 1
---TCCCCGATCTAAGATCCATCCGATCCAGGCCATGGCGGCGACCATCCAGAGCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcggg-tccagtttcgttctgtctagggcgtcgcg-gcgattgaatcgggtgctttcttagcgcgatgccgcgatcttggtctgttggtta-gagc-
    | | ||   |||    | ||| | |   | |||||  ||| ||   ||  |||||| || ||||||||||||||||||||||| || || ||||| || ||  | | |    || | | ||  | |  |     | ||    |   |    | ||   ||     |  | |    || ||    |   ||      | |||  
GAAACTCTGAAAAAAGTAAAAACCGCTGCGAACAATGGCAACGATCA---AGGCCGTGAAAGCTCGCCAGATCTTCGACAGCCGTGGAAATCCAACCGTTGAAgtgagtctcactctctaatctctctttcaccgtttcctctttcgttttctgtttggacactgagaaaatgtg----cgtgaaaacgagatgaaaaaaatgagtt

upper sequence: LOC_Os03g14450.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA09G28100.1 (Glycine max), 5'ss of exon 1
---TCCCCGATCTAAGATCCATCCGATCCAGGCCATGGCGGCGACCATCCAGAGCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcgggtccagtttcgttctgtctagggcgtcgcggcgattgaatcgggtgctttcttagcgcgatgccgcgatcttggtctgttggttagagc-
    | |  | ||  ||   | ||  | |   | |||||  ||| ||   ||  |||||| || ||||||||||||||||||||||| || || |||||||| ||  | |  |            |||    |   |  |   |       | |  |    | |   ||    |      | ||  | ||| ||  |  | |  
AAAACTCTAAACTGTGAAAAAACCACTGCGATCAATGGCAACGATCA---AGGCCGTGAAAGCTCGCCAGATCTTCGACAGCCGTGGAAATCCAACCGTCGAAgtgagtcttgctctttcaccatttcctcttgtcgttttctgtttggatactgagaaaatgtgcgagacaaaaaataagttcacgttctattt-tcggtgtt

upper sequence: LOC_Os03g14450.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S1_526V6.1 (Physcomitrella patens), 5'ss of exon 1
TCCCCGATCTAAGATCCATCCGATCCAGGCCATGGCGGCGACCATCCAGAGCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcgggtccagtttcgttctgtctagggcgtcgcggcgattgaatcgggtgctttcttagcgcgatgccgc---gatcttggtctgttggttagagc
       | |  | | |      |   |   |    |||||||||||||    | ||||| |||   || |  |||||||||||||||||||| |||||||| |   |   |||     || ||| |  |||   ||||       |  | |   ||     |  | ||  ||       | ||   | |  |||| |     
AGAATTTTTTTGGGTTCGGTTCTTGAGGTTGAGAATGGCGACCATCCAGTCAATCAAGGCGCGCGCCATTTATGACAGCCGTGGCAACCCCACTGTCGAGgtgctgtg-acgtctgtgctccttcggaatagtttgtcgaatttcatttacccattgaggaatcggtgcactggtagttgggtcgatgccgattgggtgat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88426468|gb|CI576710.1|CI576710
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88301205|gb|CI594731.1|CI594731
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|58661980|gb|CK050660.1|CK050660
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|5701699|gb|AU063506.2|AU063506
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88695201|gb|CI739239.1|CI739239
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|13895987|gb|AU182323.1|AU182323
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88351968|gb|CI625968.1|CI625968
EST:     GCGTGAAGGCCCGCCAGATCTTC-ACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|117233450|gb|CT848145.1|CT848145
EST:     GCGTGAAGGCCCGCCAAATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88352980|gb|CI630158.1|CI630158
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88315321|gb|CI613590.1|CI613590
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGGTGGTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|4878131|gb|AU062430.1|AU062430
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88427267|gb|CI586815.1|CI586815
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88333377|gb|CI642414.1|CI642414
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGC
EST: gi|88430123|gb|CI565136.1|CI565136
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|27553945|gb|CA997845.1|CA997845
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|29678593|gb|CB674868.1|CB674868
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88744176|gb|CI767536.1|CI767536
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88443516|gb|CI596983.1|CI596983
EST:     GCGTGAAGG-CCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCCTAG
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTG-CCTAG
EST: gi|88692735|gb|CI736310.1|CI736310
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88360198|gb|CI610312.1|CI610312
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88388974|gb|CI595208.1|CI595208
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88425382|gb|CI567102.1|CI567102
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|56158086|gb|C72608.2|C72608
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88300608|gb|CI587412.1|CI587412
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88398014|gb|CI585517.1|CI585517
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88724710|gb|CI747969.1|CI747969
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88570746|gb|CI662119.1|CI662119
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88728882|gb|CI752392.1|CI752392
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88393823|gb|CI621318.1|CI621318
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|58600258|gb|CK010786.1|CK010786
EST:     GCGTGAAGGNCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88695504|gb|CI737542.1|CI737542
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88388874|gb|CI592762.1|CI592762
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88390763|gb|CI610989.1|CI610989
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88372233|gb|CI619563.1|CI619563
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|4880550|gb|AU064849.1|AU064849
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88696367|gb|CI739942.1|CI739942
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88354348|gb|CI624738.1|CI624738
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88721933|gb|CI743445.1|CI743445
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88370957|gb|CI595069.1|CI595069
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88421393|gb|CI569238.1|CI569238
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88424448|gb|CI608034.1|CI608034
EST:     GCGTGAAGGCCCGCCACATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88571245|gb|CI662618.1|CI662618
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|4879156|gb|AU063455.1|AU063455
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTNCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88724437|gb|CI747696.1|CI747696
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|33685463|gb|CF313702.1|CF313702
EST:     CGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACACGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAG
genomic: CGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCAC-CGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAG
EST: gi|88424498|gb|CI608084.1|CI608084
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|27553947|gb|CA997847.1|CA997847
EST:     GCGTGAAGGCCCTCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88300718|gb|CI589710.1|CI589710
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|32947868|gb|BP184440.1|BP184440
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88726581|gb|CI750236.1|CI750236
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88740039|gb|CI763547.1|CI763547
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|58658595|gb|CK047275.1|CK047275
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|428929|gb|D25085.1|D25085
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88692197|gb|CI735772.1|CI735772
EST:     GCGTGAAGGCCCGCCAGATCTTCGANAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88730308|gb|CI753922.1|CI753922
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88348501|gb|CI629990.1|CI629990
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|568321|gb|D39165.1|D39165
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88390958|gb|CI592866.1|CI592866
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|38565671|gb|CK085124.1|CK085124
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: gi|88347145|gb|CI631225.1|CI631225
EST:     GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG                         GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCCGATCTAAGATCCATCCGATCCAGGCCATGGCGGCGACCATCCAGAGCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcgggtccagtttcgttctgtctagggcgtcgcggcgattgaatcgggtgctttcttagcgcgatgccgcgatcttggtctgttggttagagc

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