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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATTCCTCCCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcag

Basic information

species Oryza sativa
transcript LOC_Os03g13970.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351142|gb|CI623364.1|CI623364
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCCGACGATGATCTGCATAGAAAACTCGGAGTGGATGCGGAACGGCGACTA
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagG-CGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTA
EST: gi|88314956|gb|CI610015.1|CI610015
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88763078|gb|CI772634.1|CI772634
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATNATCTGCATAGACNACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|163919850|gb|EG710352.1|EG710352
EST:     AGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: AGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33657883|gb|CF280497.1|CF280497
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33654150|gb|CF276764.1|CF276764
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88721373|gb|CI744672.1|CI744672
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGNGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88445093|gb|CI589571.1|CI589571
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGGGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88693555|gb|CI737130.1|CI737130
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88390322|gb|CI605775.1|CI605775
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88391146|gb|CI595400.1|CI595400
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88745425|gb|CI768785.1|CI768785
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|58663975|gb|CK052661.1|CK052661
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33679625|gb|CF307864.1|CF307864
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88358175|gb|CI605100.1|CI605100
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88354858|gb|CI614136.1|CI614136
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGGGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88357310|gb|CI622159.1|CI622159
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGATGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88826558|gb|CI777123.1|CI777123
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33681541|gb|CF309780.1|CF309780
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88434013|gb|CI586891.1|CI586891
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88390341|gb|CI607377.1|CI607377
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAATTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88414977|gb|CI601809.1|CI601809
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88346731|gb|CI657282.1|CI657282
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGAATAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88736526|gb|CI760034.1|CI760034
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88723553|gb|CI747063.1|CI747063
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88735528|gb|CI759036.1|CI759036
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33654616|gb|CF277230.1|CF277230
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|2309803|gb|C25958.1|C25958
EST:     GCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: GCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88362712|gb|CI608861.1|CI608861
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAAATCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88354146|gb|CI637712.1|CI637712
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33681744|gb|CF309983.1|CF309983
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88425160|gb|CI564677.1|CI564677
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88356912|gb|CI620800.1|CI620800
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88742964|gb|CI766472.1|CI766472
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88360077|gb|CI610191.1|CI610191
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88742045|gb|CI765553.1|CI765553
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88718520|gb|CI742030.1|CI742030
EST:     GGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: GGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88729610|gb|CI751413.1|CI751413
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88736188|gb|CI759696.1|CI759696
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88394930|gb|CI607657.1|CI607657
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88417172|gb|CI576246.1|CI576246
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|86890984|gb|CI305857.1|CI305857
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATAATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC