1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGAGCTCGCCCACCCGCCGCCCTGCGCCGATCTCCATCGATTCCGCGACTTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccccgatcagtatgcctcatgctctttctcatctctctgtaccctacgaacccttttctcgaatttgcgtgcgttaaccctagcttctgttctagatctgaaatttccccttaatttgccttaaccttagtactattaacag
species | Oryza sativa |
transcript | LOC_Os03g13790.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG TTTGTTTGTTCGCGAAAAAGGTTTGGGGGTTCAACTGAACCCCCTATGTCCEST: gi|88402222|gb|CI615065.1|CI615065
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... ctattaacagTTTGTTTGTTCGCGAAAAAGGTTTGGGGGTTCAACTGAACCCCCTATGTCC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG TTTGTTTGTTCGCGAAAAAGGTTTGGGGGTTCAACTGAACCCCCTATGTCCEST: gi|88722844|gb|CI746354.1|CI746354
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... ctattaacagTTTGTTTGTTCGCGAAAAAGGTTTGGGGGTTCAACTGAACCCCCTATGTCC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG TTTGTTTGTTCGCGAAAAAGGTTTGGGGGTTCAACTGAACCCCCTATGTCC
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... ctattaacagTTTGTTTGTTCGCGAAAAAGGTTTGGGGGTTCAACTGAACCCCCTATGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAGCTCGCCCACCCGCCGCCCTGCGCCGATCTCCATCGATTCCGCGACTTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccccgatcagtatgcctcatgctctttctcatctctctgtaccctacgaacccttttctcgaatttgcgtgcgttaaccctagcttctgttctagatctgaaatttccccttaatttgccttaaccttagtactattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT