1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGAGCTCGCCCACCCGCCGCCCTGCGCCGATCTCCATCGATTCCGCGACTTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccccgatcagtatgcctcatgctctttctcatctctctgtaccctacgaacccttttctcgaatttgcgtgcgttaaccctagcttctgttctagatctgaaatttccccttaatttgccttaaccttagtactattaacagtttgtttgttcgcgaaaaag
species | Oryza sativa |
transcript | LOC_Os03g13790.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88328977|gb|CI658625.1|CI658625
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|117217875|gb|CT845173.1|CT845173
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCG-ATCCTG G-TTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|29628330|gb|CB633341.1|CB633341
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88373410|gb|CI614746.1|CI614746
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGGCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88351778|gb|CI617503.1|CI617503
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88409790|gb|CI571047.1|CI571047
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88730127|gb|CI753742.1|CI753742
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88351022|gb|CI620682.1|CI620682
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88352611|gb|CI624550.1|CI624550
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|29621639|gb|CB626650.1|CB626650
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|29630702|gb|CB635711.1|CB635711
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|86904162|gb|CI304596.1|CI304596
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88344650|gb|CI637259.1|CI637259
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|58612137|gb|CK039849.1|CK039849
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88387482|gb|CI583000.1|CI583000
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|87023602|gb|CI286353.1|CI286353
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88573702|gb|CI665471.1|CI665471
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88450057|gb|CI572188.1|CI572188
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88337044|gb|CI628130.1|CI628130
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: GTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88412252|gb|CI573528.1|CI573528
genomic: GTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGCEST: gi|88370989|gb|CI595101.1|CI595101
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
EST: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTG GTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
genomic: TTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccc ... cgcgaaaaagGTTTGGGGGTTCAACTGAACCCCCTATGTCCCTCGTTAGATCCGCCCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAGCTCGCCCACCCGCCGCCCTGCGCCGATCTCCATCGATTCCGCGACTTCGCGAGCAGTGGCGCCGTCGTCCGTCCTGCTGCTTCCGCCGCATCCTGgtgagcaccccgatcagtatgcctcatgctctttctcatctctctgtaccctacgaacccttttctcgaatttgcgtgcgttaaccctagcttctgttctagatctgaaatttccccttaatttgccttaaccttagtactattaacagtttgtttgttcgcgaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT