Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAAGCCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGgtacgcgtctcctccctgtagctccgtgctgttcgcctgcgcgcacagcagctcgtctcgtaagtgaattgacctcttctcgctgatgtgattttggtggactactcgatctctgcgtggttttttag

Basic information

species Oryza sativa
transcript LOC_Os03g11960.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g11960.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G891739_T01 (Zea mays), 5'ss of exon 1
---GGGAAAGCCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGgtacgcgtctcctccctgtagctccgtgctgttcgcctgcgcgcacagcagctcgtctcgtaagtg--aattgacctcttctcgctgatgtgattttggtggactactcgatctctgcgtggttttttag
   |||||||||||||| ||||| || || |||||||||||||||    ||| ||||||| ||||||| || | | | ||||||||| |||||||||||||| |||  ||    |||    |  ||   |     |  |||  |  ||    |  || |  | ||  |     | |  ||| | | ||||                                           
GCAGGGAAAGCCGGCGGACTCAAAGGGGTTGCCCTCATCGGCGGC---AGCGCCAACAGCACGGTCGCTGGGGTCATTCACTTCTTCGAGGACCCCTCCACCAgtagccgctctctcgagctctctttatctgtgttccctatgttcatcagaattcctaccttacctctcgctcgctctcctgtggctgccag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86901830|gb|CI298477.1|CI298477
EST:     CAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCG                         GGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGG
genomic: CAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGgtacgcgtct ... ggttttttagGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGG