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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCGCGTTGGATTTGACGAGCTCGTCACCACCGGCTGCGGCGGCGAGGCAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgcgtgttcccttcctcgtcatgtctcgtgtctggatctcgcggaggcgatgcgtttcagattcagtggcttgtcgttagaattacgtttttg...

Basic information

species Oryza sativa
transcript LOC_Os03g11440.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33666142|gb|CF297109.1|CF297109
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88354869|gb|CI614147.1|CI614147
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88360179|gb|CI610293.1|CI610293
EST:     GAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTA
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88737621|gb|CI761129.1|CI761129
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88395019|gb|CI607746.1|CI607746
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58608073|gb|CK036106.1|CK036106
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCAG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88352047|gb|CI626047.1|CI626047
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88725987|gb|CI749642.1|CI749642
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88349424|gb|CI653703.1|CI653703
EST:     GAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58670294|gb|CK058980.1|CK058980
EST:     CAGGCATCCGCACTCTTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|2428535|gb|C72998.1|C72998
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88720444|gb|CI743743.1|CI743743
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58604867|gb|CK032900.1|CK032900
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCAG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88392643|gb|CI625465.1|CI625465
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88385628|gb|CI566490.1|CI566490
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88392384|gb|CI612858.1|CI612858
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88347826|gb|CI655179.1|CI655179
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88453285|gb|CI565727.1|CI565727
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88339988|gb|CI650435.1|CI650435
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGGTGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58662553|gb|CK051239.1|CK051239
EST:     CAGGCATCCGCACTCTTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|66923888|gb|CX110736.1|CX110736
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCAG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88719735|gb|CI743245.1|CI743245
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88727972|gb|CI751482.1|CI751482
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88430477|gb|CI569500.1|CI569500
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|29665156|gb|CB661431.1|CB661431
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|29616182|gb|CB621194.1|CB621194
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCAG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88570638|gb|CI662011.1|CI662011
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58672408|gb|CK061094.1|CK061094
EST:     CAGGCATCCGCACTCTTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88718913|gb|CI742423.1|CI742423
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58599868|gb|CK010396.1|CK010396
EST:     CAGGCATCCGCACTCTTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88395164|gb|CI609480.1|CI609480
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88423884|gb|CI609915.1|CI609915
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88420794|gb|CI564630.1|CI564630
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58688963|gb|CK077650.1|CK077650
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCAG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88363017|gb|CI616174.1|CI616174
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGGTGGTGGTTTTAGGGTATGGCATCTGGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88313802|gb|CI597433.1|CI597433
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58689769|gb|CK078456.1|CK078456
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCAG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|88729903|gb|CI753124.1|CI753124
EST:     CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
EST: gi|58693311|gb|CK081998.1|CK081998
EST:     CAGGCATCCGCACTCTTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTG                         GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG
genomic: CAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 63 (upstream exon), 73 (downstream exon)
Score: 15

TCGTCGCGTTGGATTTGACGAGCTCGTCACCACCGGCTGCGGCGGCGAGGCAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgc ... ttggtcacagGAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTGGCTTTCCTGCCTGAAGTACAGAGTGCTGATAGGAAAATACCATTTAGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGTCGCGTTGGATTTGACGAGCTCGTCACCACCGGCTGCGGCGGCGAGGCAGGCATCCGCACTCCTCGGCGTCGGGCCGTCGTCGTTGTCCGCTACCTGgtagatccgcgtgttcccttcctcgtcatgtctcgtgtctggatctcgcggaggcgatgcgtttcagattcagtggcttgtcgttagaattacgtttttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaggcg