1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCACCGGCCCAGGCCGTACGCCGGGTGGAGCGGCGATGAGATCCTCGCGAAGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccctgattcgatcgtatctattcccccttttttttttattcaccaataaactaatgtgtttaaacgccctaaaaaataatctgttcttttttt...
species | Oryza sativa |
transcript | LOC_Os03g07570.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAGEST: gi|88313994|gb|CI599996.1|CI599996
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAGEST: gi|117224901|gb|CT845968.1|CT845968
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAGEST: gi|29636944|gb|CB641953.1|CB641953
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAGEST: gi|58664115|gb|CK052801.1|CK052801
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAGEST: gi|58695581|gb|CK084268.1|CK084268
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAGEST: gi|88299416|gb|CI572368.1|CI572368
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
EST: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCG CTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGACGAGAATGGGAAG
genomic: AGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccc ... cattttacagCTGAACATTGTGGAAGGGAAGATGCAGTATCTGTACGATGAGAATGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCGGCCCAGGCCGTACGCCGGGTGGAGCGGCGATGAGATCCTCGCGAAGAGGAAGCAGTTTCTTGGATCGTCTGTGTTCTACTACTACCAGAAGCCGgtacaaaccctgattcgatcgtatctattcccccttttttttttattcaccaataaactaatgtgtttaaacgccctaaaaaataatctgttcttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat