1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctctgtaccctaatccttttctcctgctcttgtttgtgtcctgaccgacctgggatgccgaggacatgttgcgccaagaaaagcttcctttct...
species | Oryza sativa |
transcript | LOC_Os03g06620.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCANAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88410806|gb|CI578612.1|CI578612
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88432267|gb|CI565300.1|CI565300
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAAGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88392897|gb|CI614779.1|CI614779
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|700773|gb|D47064.1|D47064
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTNAAGAGEST: gi|58591300|gb|CF989608.1|CF989608
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88300984|gb|CI592164.1|CI592164
genomic: GAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|218497580|gb|FG955135.1|FG955135
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88573345|gb|CI664916.1|CI664916
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|33662546|gb|CF293513.1|CF293513
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|117246064|gb|CT862529.1|CT862529
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|66916156|gb|CX103004.1|CX103004
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88738682|gb|CI762190.1|CI762190
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88423723|gb|CI617075.1|CI617075
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88341716|gb|CI641468.1|CI641468
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88311755|gb|CI574972.1|CI574972
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88728915|gb|CI752425.1|CI752425
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88354257|gb|CI637823.1|CI637823
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88398782|gb|CI601118.1|CI601118
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88354747|gb|CI614025.1|CI614025
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88337236|gb|CI629526.1|CI629526
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAANCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88719684|gb|CI743194.1|CI743194
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88447697|gb|CI579773.1|CI579773
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|33659100|gb|CF281713.1|CF281713
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATAGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88570475|gb|CI661848.1|CI661848
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88371298|gb|CI600146.1|CI600146
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88693640|gb|CI737215.1|CI737215
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88445319|gb|CI587213.1|CI587213
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88575234|gb|CI669379.1|CI669379
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|88669169|gb|CI720126.1|CI720126
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGEST: gi|569576|gb|D40425.1|D40425
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTNAAGAGEST: gi|88730508|gb|CI754121.1|CI754121
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
EST: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAG GATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
genomic: GACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctc ... gctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGgtgagatctctgtaccctaatccttttctcctgctcttgtttgtgtcctgaccgacctgggatgccgaggacatgttgcgccaagaaaagcttcctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa