1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGGCGATCGTCGCCGAGAGCTGCGACGTGCCGGCGCCGCAGCAGCGGCTGATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcctaccctcttctgtgcggttagaactagcttgtgtggttgatgcgatttgctcggtctgtgcctgagatgcgatggtttaggtccgattcat...
species | Oryza sativa |
transcript | LOC_Os03g03920.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|88402341|gb|CI596202.1|CI596202
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCTAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGEST: gi|29672913|gb|CB669188.1|CB669188
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTG
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTATCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|29662282|gb|CB658557.1|CB658557
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|218503059|gb|FG958652.1|FG958652
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|88732498|gb|CI755675.1|CI755675
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|58680438|gb|CK069125.1|CK069125
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|58672635|gb|CK061321.1|CK061321
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|66932287|gb|CX119135.1|CX119135
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|58606989|gb|CK035022.1|CK035022
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|58600000|gb|CK010528.1|CK010528
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|29678485|gb|CB674760.1|CB674760
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|88356760|gb|CI619246.1|CI619246
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCACEST: gi|13447548|gb|AU181042.1|AU181042
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATTGGTCCGTGGTGCTGCACCACEST: gi|29673316|gb|CB669591.1|CB669591
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACAT-GGTCCGTGGTGCTGCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcct ... cctcttgaagGTGTTGAGACGGATCACACCATTCACATGGTCCGTGGTGCTGCACCACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGCGATCGTCGCCGAGAGCTGCGACGTGCCGGCGCCGCAGCAGCGGCTGATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtacgtgcctaccctcttctgtgcggttagaactagcttgtgtggttgatgcgatttgctcggtctgtgcctgagatgcgatggtttaggtccgattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc