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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCTACTACCTCCGCAAGAAGGTCGCCTCCCAGAAGATCGACCTCGACGTCATCCGCGACATCGATCTCTACCGCATCGAACCCTGGGATCTCCAAGgtacaactagagatcgtatgattaatttgagtttcagagatgatcattgtggcattatttatcctaattgtgttgcctggtttgttgattgatgaag

Basic information

species Oryza sativa
transcript LOC_Os03g03540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G025642_T02 (Zea mays), 5'ss of exon 2
GTCGGCTACTACCTCCGCAAGAAGGTCGCCTCCCAGAAGATCGACCTCGACGTCATCCGCGACATCGATCTCTACCGCATCGAACCCTGGGATCTCCAAGgtac---aactag----agatc------gtatgatt-aatttgagtt-----tcagagatgatcattgtggcattatttatcctaattgtgttgcctggtttgttgattgatgaag
||||||||||||||| | |||||||| ||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||||||   | ||||    || ||      |  || |   ||  |   |     || ||  || |     ||   |||  | ||||  |   | || ||    | |  ||   | |||
GTCGGCTACTACCTCAGGAAGAAGGTGGCCGCCCAGAAGATCGACCTCCACGTCATACGCGACATCGACCTCTACCGCATCGAGCCATGGGATCTCCAAGgtacgctagctagccgcagctccggccagcctgttccgatccggcctgtcgatctgaactgctggcgatgatcttaaatttcctgctctggctggctctgctctcaatctctcaag

upper sequence: LOC_Os03g03540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT2G18060.1 (Arabidopsis thaliana), 5'ss of exon 1
GTCGGCTACTACCTCCGCAAGAAGGTCGCCTCCCAGAAGATCGACCTCGACGTCATCCGCGACATCGATCTCTACCGCATCGAACCCTGGGATCTCCAAGgta--caactagagatcgtatgat---taatttgagtttcagagatgatcattgtggcattatttatcctaattgtgttgcctggtttgttgattgatgaag
||||| ||||| ||  | |||||  |||| || || ||||| || |||||||||||| | ||||||||||||||| | || ||||| |||||||| ||||||     ||   | | |||  |||   | | ||  |||   |   |  | ||| |  | |||   ||  ||| |||                          
GTCGGGTACTATCTAAGGAAGAAAATCGCATCGCAAAAGATTGATCTCGACGTCATCAGAGACATCGATCTCTACAGAATAGAACCATGGGATCTACAAGgttacttaccgaacaccgtgagatattttactttggttaaggttttattgattatcacctta--aattttaaatgttacag---------------------

upper sequence: LOC_Os03g03540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 1
GTCGGCTACTACCTCCGCAAGAAGGTCGCCTCCCAGAAGATCGACCTCGACGTCATCCGCGACATCGATCTCTACCGCATCGAACCCTGGGATCTCCAAGgtacaactagagatcgtatgattaatttgagttt-cagagatgatcattgtggcattatttatcctaattgtgttgcctggtttgttgattgatgaag
|||||||||||| | |  |||||||| |||||| ||||||||||| | |||||||||| ||| ||||||||||||    |||| || |||||  | || ||||   ||||    |      |  || ||| |   ||    |||    | |  |||| ||  ||   ||| ||                         
GTCGGCTACTACTTGCAGAAGAAGGTGGCCTCCAAGAAGATCGACTTGGACGTCATCCACGAGATCGATCTCTACAAACTCGAGCCGTGGGACTTGCACGgta-gtctagtctcctccatttcgatatgattgcacaccactgacacctctttcattgttcttc--gattttggcag---------------------

upper sequence: LOC_Os03g03540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ18283 (Selaginella moellendorffii), 5'ss of exon 1
GTCGGCTACTACCTCCGCAAGAAGGTCGCCTCCCAGAAGATCGACCTCGACGTCATCCGCGACATCGATCTCTACCGCATCGAACCCTGGGATCTCCAAGgtacaactagagatcgtatgattaatttgagttt-cagagatgatcattgtggcattatttatcctaattgtgttgcctggtttgttgattgatgaag
|||||||||||| | |  |||||||| |||||| ||||||||||| | |||||||||| ||| ||||||||||||    |||| ||||||||  | || ||||   ||||    |      |  |  ||| |   ||    |||    | |  |||| ||  ||   ||| ||                         
GTCGGCTACTACTTGCAGAAGAAGGTGGCCTCCAAGAAGATCGACTTGGACGTCATCCACGAGATCGATCTCTACAAACTCGAGCCCTGGGACTTGCACGgta-gtctagtctcctccatttcgacatgattacacaccactgacacctctttcattgttcttc--gattttggcag---------------------