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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCGGCGGACGTACCTGGTGGCAGCGGTGATGTCCAGCCTCGGGATCACGTCCATGGCCGCCGCCGCCGTCTACTACCGCTTCGCCTGGCAAATGGAGgtaggtaacacgccatcgccaaactcccgctcgcatcttaccattacccaattcggcaattccttcgccgcagcactaaaatttctccgcgtgctcgaccag

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G382534_T01 (Zea mays), 5'ss of exon 1
GGAGCGGCGGACGTACCTGGTGGCAGCGGTGATGTCCAGCCTCGGGATCACGTCCATGGCCGCCGCCGCCGTCTACTACCGCTTCGCCTGGCAAATGGAGgtaggtaacacgccatcgc-caaactcccgctcgcatcttaccattac-ccaattcg-gcaattccttcgccgcagcactaaaatttctccgcg-tgctcgaccag
|||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    ||| | |||| |  |     |  ||   | |  | |  | ||  | || |    ||| |  ||||           ||||  ||| |||| | ||||
GGAGCGGCGGACGTACCTCGTGGCGGCCGTCATGTCCAGCCTCGGGATCACGTCCATGGCCGCCGCCGCCGTCTACTACCGCTTCGCATGGCAAATGGAGgtacg--gtacgtcgtcgcacgtaacgaggggcgtcgcgtcgcgtcgcgccggtccgtgtgtgtccattcccgctcatgggtcgattctgtgcggtgcttggccag