Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAGGGCTCGGCAAACATCAGGTAGCCGTCCCTCCTTTATCCACTTCGCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaattgatcagacatccctaatctcactgcttcctgcacctttgctgattctagcgatgcttccaggcttatgctgcagtgcactagtttcattt...

Basic information

species Oryza sativa
transcript LOC_Os03g02590.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88676888|gb|CI731001.1|CI731001
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88666259|gb|CI716415.1|CI716415
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88905689|gb|CI712988.1|CI712988
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88670117|gb|CI724233.1|CI724233
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|87005642|gb|CI287466.1|CI287466
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88413042|gb|CI578893.1|CI578893
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCCTCGGCCTTGT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAG-CTCGGCCTTGT
EST: gi|88593781|gb|CI713735.1|CI713735
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|218482457|gb|FG952466.1|FG952466
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88672349|gb|CI726465.1|CI726465
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88671724|gb|CI725755.1|CI725755
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88669283|gb|CI719421.1|CI719421
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88389461|gb|CI600630.1|CI600630
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|218487592|gb|FG945521.1|FG945521
EST:     GTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88666530|gb|CI718666.1|CI718666
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|25798400|gb|CA754361.1|CA754361
EST:     CTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: CTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88675189|gb|CI729302.1|CI729302
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88421294|gb|CI569139.1|CI569139
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|33799872|gb|CF325803.1|CF325803
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88665746|gb|CI715902.1|CI715902
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|87023911|gb|CI288264.1|CI288264
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88675736|gb|CI729849.1|CI729849
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|218488960|gb|FG946367.1|FG946367
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88904724|gb|CI712023.1|CI712023
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|58589271|gb|CF987579.1|CF987579
EST:     GGGCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|87005528|gb|CI287352.1|CI287352
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88405917|gb|CI591312.1|CI591312
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|86829554|gb|CI286745.1|CI286745
EST:     CCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: CCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88670155|gb|CI724271.1|CI724271
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|89171703|gb|CI720762.1|CI720762
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88674176|gb|CI728289.1|CI728289
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88672563|gb|CI726679.1|CI726679
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88904917|gb|CI712216.1|CI712216
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88904694|gb|CI711993.1|CI711993
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88908769|gb|CI714911.1|CI714911
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88973600|gb|CI718028.1|CI718028
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88593535|gb|CI713489.1|CI713489
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|33662420|gb|CF293387.1|CF293387
EST:     GCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|86829924|gb|CI288595.1|CI288595
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88673268|gb|CI726043.1|CI726043
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|29687965|gb|CB684240.1|CB684240
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88441036|gb|CI693618.1|CI693618
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATACCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88675934|gb|CI730047.1|CI730047
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88669906|gb|CI724022.1|CI724022
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88905467|gb|CI712766.1|CI712766
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|58611378|gb|CK039090.1|CK039090
EST:     CGCTGTGTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: CTCTCT-TCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88984133|gb|CI723689.1|CI723689
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88312118|gb|CI580283.1|CI580283
EST:     CTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGCTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGACACGCGAGCAGAGCTCGGCCTTGTT
genomic: CTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGG-TTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|87023769|gb|CI288122.1|CI288122
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88972526|gb|CI717266.1|CI717266
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88669463|gb|CI723381.1|CI723381
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|218482011|gb|FG963443.1|FG963443
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GTGTAGTGAAGATGAGCACGTTTAGATGCCACGCGAGCAGAGCTCGGCCTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagG-GTAG-GAAGATGAGCACG-TTAGATGCCACGCGAGCAGAGCTCGGCCTT
EST: gi|38469451|gb|CF953582.1|CF953582
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|87005527|gb|CI287351.1|CI287351
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88582236|gb|CI699630.1|CI699630
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88666043|gb|CI716199.1|CI716199
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88676362|gb|CI730475.1|CI730475
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|86910407|gb|CI293060.1|CI293060
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88665670|gb|CI715826.1|CI715826
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|8955721|gb|BE229527.1|BE229527
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCCTTGT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCC-TTGT
EST: gi|88668601|gb|CI719558.1|CI719558
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
EST: gi|88670255|gb|CI724371.1|CI724371
EST:     GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAG                         GGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT
genomic: GCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 115

GTGGAAGGGCTCGGCAAACATCAGGTAGCCGTCCCTCCTTTATCCACTTCGCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaatt ... gttacttcagGGTAGGAAGATGAGCACGTTAGATGCCACGCGAGCAGAGCTCGGCCTTGTTGTTCTGTACTTGAACAAAGCCGAGGCCAGGGACAAGATATGCAGGGCGA




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGAAGGGCTCGGCAAACATCAGGTAGCCGTCCCTCCTTTATCCACTTCGCTCTCTTCTCTGCAGCGCTGCATCCTACTCCCTGGTTAGCAATAGCAAGgtaattaattgatcagacatccctaatctcactgcttcctgcacctttgctgattctagcgatgcttccaggcttatgctgcagtgcactagtttcattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG