1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CTTCGACTTCGGCGCCCCCGACGGCCACGGCATCTTCGACGCGCTCGGCGACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcgcccgccaccctacgccatcgccgcccgcttgttgatttttattttttattactgtgctgcaatcccccatccaccgatcagatcgtcgtc...
species | Oryza sativa |
transcript | LOC_Os02g58020.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88575412|gb|CI669557.1|CI669557
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88420855|gb|CI620173.1|CI620173
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88359491|gb|CI621022.1|CI621022
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGAGGCTCGGTGCGTAGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88594152|gb|CI711391.1|CI711391
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCCAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88423363|gb|CI576488.1|CI576488
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88717626|gb|CI741136.1|CI741136
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGANGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88731053|gb|CI754666.1|CI754666
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88347463|gb|CI637403.1|CI637403
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGCTAAAACCTEST: gi|88724350|gb|CI747609.1|CI747609
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88763977|gb|CI773393.1|CI773393
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88585189|gb|CI702802.1|CI702802
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88721214|gb|CI744513.1|CI744513
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88442851|gb|CI694255.1|CI694255
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|66915780|gb|CX102628.1|CX102628
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88582946|gb|CI699414.1|CI699414
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|29627492|gb|CB632503.1|CB632503
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|117239285|gb|CT849366.1|CT849366
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88587455|gb|CI705201.1|CI705201
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88695738|gb|CI737776.1|CI737776
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88765367|gb|CI774461.1|CI774461
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCTEST: gi|88305044|gb|CI626714.1|CI626714
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
EST: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAG GTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
genomic: ACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcg ... ttcaatatagGTCTGCAGTAAGATTTGTGAAAAATTTGGAAAGCATGGCCTGGTAAAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGACTTCGGCGCCCCCGACGGCCACGGCATCTTCGACGCGCTCGGCGACCTCCTCATCGACGCTCGGTGCGTCGCCGACGAGGAGCACTGCCTCGAGgtaccacgcgcccgccaccctacgccatcgccgcccgcttgttgatttttattttttattactgtgctgcaatcccccatccaccgatcagatcgtcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccatc