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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaatgctttctcaactacttagctactccatccatccgataaaaaaccaatcggaacgtgacacattctattattatgta...

Basic information

species Oryza sativa
transcript LOC_Os02g57720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G081843_T01 (Zea mays), 5'ss of exon 1
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaatgctttctcaactactta-gctactccatccatccgataaaaaaccaatcggaacgtgacacattctattattatgta
 ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |  ||||||||||| ||||||||||  |    ||  |      |   | |   || | | || | ||| |  |     | | || |   |||     | |  |||   |||  ||||||     
GCACCTGGCGACCATCCCCATCACCGGCACCGGCATCAACCCCGCGCGCAGCCTCGGCGCCGCCATCGTCTACAACAGGTCCCACGCATGGAACGACCACgtgagtt-tcattctggccatgtcgatcgatcgaattctcatgctgcggcgcgagttc-atgactgacc---ttggatttgaactatt--attattgcag-

upper sequence: LOC_Os02g57720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv15s0046g02410.t01 (Vitis vinifera), 5'ss of exon 3
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaat--gctttctcaactacttagctactc--catccatccgataaaa-aaccaatcggaacgtgacacattctattattatgta
 || || || ||||||||||||||||| |||||||||||||| ||  | || ||||| ||||||||| |||| ||| | |   | || ||| | |||   ||| |  |  || ||||  |  ||  |    | |||   |||  |  |||  |||| ||| |  ||    ||   |    |  | |  | |  | ||   ||   
TCATCTGGCAACCATCCCCATCACCGGAACCGGCATCAACCCTGCTAGGAGTCTCGGGGCCGCCATCATCTACAACAGGGGGAATGCCTGGGATGACATGgtaagtga--aaacattgctctataagaagacccaatagcttctcatctcgtcatctatctgtgaatctgacttgtattgatttcattcttgttgttcccatcag

upper sequence: LOC_Os02g57720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 3
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaatgctttctcaactacttagctactccatccatccgataaaaaaccaatcggaacgtgacacattctattattatgta
 || || || ||||||||||||||||| |||||||||||||| ||  | || || || ||||||||| |||| ||| | |  || || ||| | |||   ||| ||  |        |   |||   |||||| ||  | |  || ||  |  ||| |      |   | |     | |      |||  ||        
TCATCTGGCAACCATCCCCATCACCGGAACCGGCATCAACCCTGCTAGGAGTCTGGGGGCCGCCATCATCTACAACAGAGAGCATGCCTGGGATGACATGgtaagctccatgatcagacccaatcacttctcatctcatcattta-tctgtgaatctgccttgtattgatttcattcttttgttgttcccttcag-----

upper sequence: LOC_Os02g57720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 3
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaatgctttctcaactacttagctactccatccatccgataaaaaaccaatcggaacgtgacacattctattattatgta-----------------------------
 ||| | |||||||||||||| || || |||||||||||||| || || ||||| || || |||||| |||| |||   | |||||||||| ||||||||||| || ||| |      ||   | |||  |    | |||  |   | | || |  | |   | ||  ||||   | |||  |     |||  ||   |                              
GCACTTGGCCACCATCCCCATAACTGGAACCGGCATCAACCCAGCTCGGAGCCTGGGTGCGGCCATCATCTACAACAAGGACCACGCATGGGACGACCACgtaagccaccgattgggcttctctacttcattttttcctttcccttttcttctagtcaactcacaat-aatcaata-gtgctaatgcttatggttgccttttcttttcttttactgcctcatgctacag

upper sequence: LOC_Os02g57720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S1_535V6.2 (Physcomitrella patens), 5'ss of exon 3
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAAC---CGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaat-gctttctcaactacttagctactccatccatccgataaaaa-accaatcggaacgtgacacattctattattatgta--------------------------------------------------------
   | | |||||||| ||||||||||| || ||||||||||||||||| || || || || ||  | |||| ||||   |    | |||| |||  ||| |||||  |   | | |  ||  ||     | || ||   | ||   | | | ||     |  || |    |   ||  |    |||    | || | | |||                                                           
---CTTGGCCACCATTCCCATCACCGGAACTGGCATCAACCCCGCCCGTAGTCTAGGTGCTGCTGTTGTCTTTAACAAACAGAACAACGCTTGGGCCGATCACgtgagtt-caagcttttgcttccccaccttatcctatgctcgccgaatgcaaattgcaaatcacgtcagggatatgcttatgaatattgctctcagtattagttgtcaggctcatgtcggacgggctttgatctctgttttttttggtgcttttgcag

upper sequence: LOC_Os02g57720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 3
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaatgctttctcaactacttagctactccatccatccgataaaaaaccaatcggaacgtgacacattctattattatgta
|||||| ||||| ||||||||||| ||||| ||||||||||| || || || |||||| | ||  || |||| ||  ||| ||| || ||| | || || ||| | | |     | | ||| |   |||| |  || |||      || | |     | |  |    |  |  | | |                      
CCACCTTGCCACGATCCCCATCACTGGCACGGGCATCAACCCAGCGCGAAGTCTCGGCTCGGCTGTCATCTACAATGGCGACCAGGCCTGGGATGATCATgtaag-atcactttactctttgaatttttcgct-cttcttttaagttctaacttgttggtgcatcgtctgtgtgtaagcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55411667|gb|CV724043.1|CV724043
EST:     CGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: CGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88199167|gb|CI199017.1|CI199017
EST:     GCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGGTTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86544355|gb|CI184561.1|CI184561
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86531860|gb|CI172066.1|CI172066
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86546849|gb|CI187055.1|CI187055
EST:     GCCTCGGCGCCGCCATCGTTTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86508398|gb|CI151031.1|CI151031
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCCAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|89173682|gb|CI041575.1|CI041575
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86512355|gb|CI154988.1|CI154988
EST:     CTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: CTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|29613071|gb|CB618084.1|CB618084
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|38477556|gb|CF961689.1|CF961689
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88204112|gb|CI203961.1|CI203961
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86542715|gb|CI182921.1|CI182921
EST:     GCCTCGGCGCCGCCATCGTTTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|15856434|gb|BI809246.1|BI809246
EST:     TCGGCGCCGCCATCGTCTTATAAACCGCGCCCACGCATGGCACGACCCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTA
genomic: TCGGCGCCGCCATCGTC-TAT-AACCGCGCCCACGCATGGCACGA-CCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTA
EST: gi|88842804|gb|CI371704.1|CI371704
EST:     CCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: CCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88267439|gb|CI379374.1|CI379374
EST:     GGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|58591160|gb|CF989468.1|CF989468
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88204466|gb|CI204315.1|CI204315
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86546857|gb|CI187063.1|CI187063
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|38482172|gb|CF966228.1|CF966228
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|38480461|gb|CF964550.1|CF964550
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCCTGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86538096|gb|CI178302.1|CI178302
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86508851|gb|CI151484.1|CI151484
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATTTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88445295|gb|CI554903.1|CI554903
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86538142|gb|CI178348.1|CI178348
EST:     CCTCGGCGCGCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: CCTCGGCGC-CGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88204375|gb|CI204224.1|CI204224
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88428041|gb|CI556935.1|CI556935
EST:     TAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: TAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|29613072|gb|CB618085.1|CB618085
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|16754416|gb|BM038795.1|BM038795
EST:     CCTCGGCGCCGCCAGTCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: CCTCGGCGCCGCCA-TCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|38476180|gb|CF960313.1|CF960313
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|15847925|gb|BI796201.1|BI796201
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACT-GCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|87034917|gb|CI188720.1|CI188720
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|38565731|gb|CK085184.1|CK085184
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88274632|gb|CI395038.1|CI395038
EST:     GCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|38476310|gb|CF960443.1|CF960443
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|88206676|gb|CI206525.1|CI206525
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTAC
EST: gi|86871054|gb|CI328256.1|CI328256
EST:     GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCAC                         TGGATTTTCTTGGTTGGTCCGTTCATCGGAGCGGGCACTGGCGGCCATGTA
genomic: GCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGC-GGCACTGGCGGCCATCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 43 (upstream exon), 68 (downstream exon)
Score: 8

CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaacc ... atttgtgcagTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCTCGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGCATGGCACGACCACgtatgcaaccaaccattatttaatgctttctcaactacttagctactccatccatccgataaaaaaccaatcggaacgtgacacattctattattatgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa