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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTCTCCCCCGCCGCCTTCCGCTCGTCGCGCATCTGGCGAGCAGAGCAGGGGAGGGGGCGCCGCCGCCGCCGCCGTCCTTGTGCATCCTCATCCCGgtgagcatccgcatcctctctctctcattctcattcatctctctctccctcccagtctcacccacacttttgtctcgaatttgcttgctcgcgttaaccc...

Basic information

species Oryza sativa
transcript LOC_Os02g57630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58664755|gb|CK053441.1|CK053441
EST:     CCGCCGCCGCCGTCCTTGTGCATCCCCATCCCG                         GTTTTGGGGGTGGTTCTGTCCCAGGTTGGATCCGCGCCCCC-GGCTGTCAC
genomic: CCGCCGCCGCCGTCCTTGTGCATCCTCATCCCGgtgagcatcc ... gcccccaaagGTTTTGGGGGTGGTTCTGTCCCAGGTTGGATCCGCGCCCCCTGGCTGTCAC
EST: gi|88363905|gb|CI607215.1|CI607215
EST:     AGGGGAGGGGGCGCCGCCGACGCCGCCGCTCCTTGTGCATCCTCATCCCG                         GTTTTGGGGGTGGTTCTGTCCCAGGTTGGATCCGCGCCCCCTGGCTGTCAC
genomic: AGGGGAGGGGGCGCCGCCGCCGCCGCCG-TCCTTGTGCATCCTCATCCCGgtgagcatcc ... gcccccaaagGTTTTGGGGGTGGTTCTGTCCCAGGTTGGATCCGCGCCCCCTGGCTGTCAC