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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTCCGACGCCGCCGCTCGCCGCGCCTTCCGCTACACGCGCCCCGTGCTTCAGGGCACCCTCCAACTCATGGGATGCAAGGCTCGCCATGCCTTCAAGgtataatacctatctatctttctatcttcttgttcatcttgatcccaacaatggaaaaactgtgcctgctctctctctctctctctctcccgcttaattt...

Basic information

species Oryza sativa
transcript LOC_Os02g57400.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57400.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G342327_T03 (Zea mays), 5'ss of exon 2
CGTCTCCGACGCCGCCGCTCGCCGCGCCTTCCGCTACACGCGCCCCGTGCTTCAGGGCACCCTCCAACTCATGGGATGCAAGGCTCGCCATGCCTTCAAGgtataatacctatctatctttctatcttcttgttcatcttgatcccaacaatg-gaaaaactgtgcctgctctctctctctctctctctcccgcttaattt-----
| || |||||| ||  |  ||||| || ||||| ||||||||||||||||| ||| ||||||| || ||||||||||||||| ||||||||||||||||||     | ||| |||  ||  |   || ||      | |    | |     || |    |   ||| |||| ||   ||  || ||| |   ||||   ||     
CATCGCCGACGGCGGGGTCCGCCGGGCGTTCCGGTACACGCGCCCCGTGCTGCAGAGCACCCTGCATCTCATGGGATGCAAGCCTCGCCATGCCTTCAAGg-----tccctctcttcctccccgcctactcaccgctttcctgctcgctcttgcgtgtgatcttgcttgctttcctcctacctttct-ttaagcttgggttgctac

upper sequence: LOC_Os02g57400.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G123544_T01 (Zea mays), 5'ss of exon 1
CGTCTCCGACGCCGCCGCTCGCCGCGCCTTCCGCTACACGCGCCCCGTGCTTCAGGGCACCCTCCAACTCATGGGATGCAAGGCTCGCCATGCCTTCAAGgtataatacctatctatctttctatcttcttgttcatcttgatc--ccaacaatggaaaaactgtgcctgctctctctctctctctctctccc-gcttaattt-
|||| |||||| ||  |  ||||| || ||||| ||||||||||||||||| ||| ||||||| || ||||||||||||||| |||||||||||||||||||       || |   ||  |||  |  || | || |     ||  ||  |  ||     |  |    || | |   |   |   |        |||    || 
CGTCGCCGACGGCGGGGGCCGCCGGGCGTTCCGGTACACGCGCCCCGTGCTGCAGAGCACCCTGCATCTCATGGGATGCAAGCCTCGCCATGCCTTCAAGgtc---cctctcttcctccctctccccgctcgctcttgcgtgtcatcctgctttgctcctatagc-tttgttataaataaataaataaaaagaagctcgggttg

upper sequence: LOC_Os02g57400.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA12G08340.1 (Glycine max), 5'ss of exon 2
CGTCTCCGACGCCGCCGCTCGCCGCGCCTTCCGCTACACGCGCCCCGTGCTTCAGGGCACCCTCCAACTCATGGGATGCAAGGCTCGCCATGCCTTCAAGgtataatacctatctatctt-tctatcttcttgttcatctt---gatcccaacaatggaaaaactgtgcctgctctctctctctctctctctcccgcttaattt
 |||   ||| |||            ||||||||||| |||| ||||| || ||| |||| ||||| |||||||| ||||| || || || |||||||||||    |  || | | |||| ||| | |||   |||  | |    ||        |   |  |   |  ||| |  |    | ||   |  || | ||      
GGTCGATGACTCCGAGAGGAAAGAGTCCTTCCGCTACTCGCGTCCCGTTCTGCAGAGCACGCTCCAGCTCATGGGTTGCAAAGCGCGTCACGCCTTCAAGgtgccttttctttttctcttctctcttttccaattcgccgtcgaaattattcttctttcatgatgatttctgattccatagtttcgtacaatctccctgc----

upper sequence: LOC_Os02g57400.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G20130.1 (Glycine max), 5'ss of exon 1
CGTCTCCGACGCCGCCGCTCGCCGCGCCTTCCGCTACACGCGCCCCGTGCTTCAGGGCACCCTCCAACTCATGGGATGCAAGGCTCGCCATGCCTTCAAGgtataatacctatctatctttctatcttcttgttcatcttgatcccaacaatggaaaaactgtgcctgctctctctctctctctctctcccgcttaattt-------
 |||   ||| |||            |||| |||||| |||| ||||| || ||| |||| ||||| |||||||||||||| || || || ||||||||||     | | | | | | ||||| | || | | |  ||   |||| ||  ||          ||  |      ||       |   ||  ||  |||| |       
GGTCGAGGACTCCGAAAAGAAAGAGTCCTTTCGCTACTCGCGTCCCGTTCTGCAGAGCACGCTCCAGCTCATGGGATGCAAAGCGCGTCACGCCTTCAAGg-----tgcttttttctttttctctattttcgat--tcgccatccaaattattcttctttcatgattttggattcatgtgtccatactttcgaataatctcccagct