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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTACCTAGCTCGCGTCGGAATTAATGGCCGCGACCGCCGGCGACGCCGCCGCCGCCGCCGCCGCCGCCTGCCCTGCCTACCCATGGCCGAGCGACGGgtgagagcatgaatgcatgtcgattgctttcgcttgatcacattaattttgcatgaaattaaccacgtcgcgcgcgctaattaattaacccggtggagctaattttctgatgtgatgtgagcag

Basic information

species Oryza sativa
transcript LOC_Os02g56930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|568192|gb|D39027.1|D39027
EST:     CCATGGCCGAGCGACGG                         AGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGT-NCA
genomic: CCATGGCCGAGCGACGGgtgagagcat ... atgtgagcagAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGTGCCA
EST: gi|11025789|gb|AU162390.1|AU162390
EST:     CATGGCCGAGCGACGG                         AGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGTGCCA
genomic: CATGGCCGAGCGACGGgtgagagcat ... atgtgagcagAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGTGCCA