1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggttttgtttgcctaaccctaacccctcccatcagccgtggttcctacgtagtttcgtcgatttccactattcgatgctccgggcgagctcttctg...
species | Oryza sativa |
transcript | LOC_Os02g56550.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCTAACGGATCAG GCAAGACCACTCTCTTGAAGAATCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|88396566|gb|CI601049.1|CI601049
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|88727100|gb|CI750755.1|CI750755
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|27548820|gb|CA766802.2|CA766802
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCTAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|44668118|gb|CR281552.1|CR281552
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCTAACGGATCAG GCAAGATCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|88733885|gb|CI755321.1|CI755321
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|568460|gb|D39309.1|D39309
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|33690072|gb|CF318311.1|CF318311
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAEST: gi|88717137|gb|CI740647.1|CI740647
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
EST: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAG GCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
genomic: CCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggtttt ... caaaccacagGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGgttaggttttgtttgcctaaccctaacccctcccatcagccgtggttcctacgtagtttcgtcgatttccactattcgatgctccgggcgagctcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggcgag