1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCCGTCGACGACGCCGACGACGACCAGCTCGCCTCCATGTCCACGGAGGACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctctctctctctctccgcctccgcgggaaaccctagcttttgccccagcgatctcctccatgggatttggtctgatttgtgggggtttgtctcatcgggtgcctcag
species | Oryza sativa |
transcript | LOC_Os02g56000.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAG GATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCEST: gi|29659489|gb|CB655764.1|CB655764
genomic: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctc ... ggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATC
EST: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAG GATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCEST: gi|29615714|gb|CB620726.1|CB620726
genomic: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctc ... ggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATC
EST: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAG GATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCEST: gi|29615760|gb|CB620772.1|CB620772
genomic: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctc ... ggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATC
EST: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAG GATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCEST: gi|29683381|gb|CB679656.1|CB679656
genomic: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctc ... ggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATC
EST: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAG GATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATC
genomic: ACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctc ... ggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGTCGACGACGCCGACGACGACCAGCTCGCCTCCATGTCCACGGAGGACATCGTCAGGGCAACCCGCCTCCTCGACAACGAGACCCGCGTCCTCAAGgtttgctctctctctctctctccgcctccgcgggaaaccctagcttttgccccagcgatctcctccatgggatttggtctgatttgtgggggtttgtctcatcgggtgcctcag
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