Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGCGAGGCGAGCGGGCGGGCGCTCTTCTACTGGCTCACCGAGGCCGCCGCCGCCGCCGCCGCCGCCACCAAGCCCCTCGTCCTCTGGCTCAACGGCGgtaagttaagtatactgttctacactgcacatttctgaattctcttcgacctctttctgcatgaataaatttcacaacgtccttaaattgattcgatcca...

Basic information

species Oryza sativa
transcript LOC_Os02g55130.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g55130.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G879749_T02 (Zea mays), 5'ss of exon 1
---GTGAGCGAGGCGAGCGGGCGGGCGCTCTTCTACTGGCTCACCGAGGCCGCCGCCGCCGCCGCCGCCGCCACCAAGCCCCTCGTCCTCTGGCTCAACGGCGgtaagttaagtatactgttctacactgcacatttctgaattctcttcgacctctttctgcatgaataaatttcacaacgtccttaaattgattcgatcca-------
   |||  |  ||   |||| || ||||||||||||||||| |||||||||| || || || ||| |||||   |||||||||||| |||||||||||||| ||| ||| | ||  ||   || || |||||    || ||  | | || |  |  ||| | |||| |  |||     | | |        |   |||  |         
GCGGTGGACCGGGACCGCGGCCGCGCGCTCTTCTACTGGCTGACCGAGGCCGTCGGCGACGACGCGGCCGC---CAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtca-gtg-acccctccac-ctgcag---tcagagct-tattagctcatttttttcatgcaataatcagcaatcatgtggttcctcgctcgtcctccgtggtc