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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAGGGAAGCTTCAGATGCCAGGCAGCCAGTTAGTGTCGGATGATGATAATGCGGAAAGTGACGATGAGGTGCTATATAGACGAACAGTCATGCTCTAgtgagtgtagtttcttcttcttgtctttctttgaaaaaagctgcagcatattagtactttgtgaacattcacaagattaaaaaaaaactggccatttttgttccag

Basic information

species Oryza sativa
transcript LOC_Os02g54200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54200.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G000610_T02 (Zea mays), 5'ss of exon 1
---TGGGAGGGAAGCTTCAGATGCCAGGCAGCCAGTTAGTGTCGGATGATGATAATGCGGAAAGTGACGATGAGGTGCTATATAGACGAACAGTCATGCTCTAgtgagtgtagttt-cttcttcttgtctttctttgaaaaaagctgcagc-atattagtactttgtgaacattcacaagattaaaaaaaaactggccattttt-gttccag
   |||| ||||||||||||||||||||||||||| ||||||| ||||||||  |   ||| | ||| |||||||||||||||||  | || |||||| ||||||||||||| |||  ||||| |||  |||||| |||  | ||   ||| | | ||||  |||||||  |||||    |||| ||||    ||  |||||||  || |||
CGATGGGTGGGAAGCTTCAGATGCCAGGCAGCCAGCTAGTGTCAGATGATGACGA---GGATACTGATGATGAGGTGCTATATAGGAGGACGGTCATGATCTAgtgagtgtaatttgtttcttgttggttttcttcgaattaggccttagccacagtagt-ttttgtgatgattcatggaattacaaaa--tttgcacattttttattacag