Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCACATCGATGAGTCCTTCAACTGCCCGCTCAATGGCCGCCCTGATAATGCTTACCAGAGGCTCCGGTGGCAGCCCAGCGGATGCAGCATTCCAAGgtgagttgagactacttgagcaactctgttttattcagttcttggtgtttcatgtgacacagctgaaaattcagttccatgatgttcataacag

Basic information

species Oryza sativa
transcript LOC_Os02g53380.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53380.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G165961_T01 (Zea mays), 5'ss of exon 1
GTCCTCACATCGATGAGTCCTTCAACTGCCCGCTCAATGGCCGCCCTGATAATGCTTACCAGAGGCTCCGGTGGCAGCCCAGCGGATGCAGCATTCCAAGgtgagttgagac-tacttgagcaact---ctgtttt-----attcagttcttggtgtttcatgtgacacagctgaaaattcagttccatgatg-ttcataacag------------------------------------
| ||||||||||| ||||||||||||||||  ||||| ||||| ||||| || |||||| |||||||||||||||| |||||||||||||| || || |||||||   | |  ||||| | |||||   | |||||     ||||| |  ||   |||   | |      |    |||| ||||||  || || || ||   |                                     
GCCCTCACATCGACGAGTCCTTCAACTGCCACCTCAACGGCCGGCCTGACAAAGCTTACGAGAGGCTCCGGTGGCAACCCAGCGGATGCAGAATCCCGAGgtgagaaaaaaagtacttcaacaactgcgccgttttggtgaattcaatagttatagttagttattggcgtgtgacaaatgcagttctgtgttgctttattttaaagttattagttctgtcacctgtgttgcttatgttag

upper sequence: LOC_Os02g53380.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G843892_T01 (Zea mays), 5'ss of exon 1
GTCCTCACATCGATGAGTCCTTCAACTGCCCGCTCAATGGCCGCCCTGATAATGCTTACCAGAGGCTCCGGTGGCAGCCCAGCGGATGCAGCATTCCAAGgtgag-----ttgagactacttgagcaactctgttttatt----cagttcttggtgtttcatgtgacacagct-----gaaaattcagttccatgatgttcataacag
|||||||| |||||||||||||||||||||  ||||| ||||| ||||| || |||||| |||||||||||||||| || ||||||||||| || ||||||||||     || | ||| |   | | || | ||||  ||    ||     ||  |||   |||  |     |     |||| || |||||  | || |   |   ||
GTCCTCACGTCGATGAGTCCTTCAACTGCCACCTCAACGGCCGTCCTGACAAAGCTTACGAGAGGCTCCGGTGGCAACCTAGCGGATGCAGAATCCCAAGgtgagaaaggtttatactgcaacaactacgcggtttagttactgcaccaaatgcagttctgtgttgctttttttttttgaaagtttagttctgtcatctgtgtgttag